Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00496 ATGGCACTTCTACACACACTCTCACCTTTACCAAAACCCCTTCTCTCTTCATCCTTCACAAAAAAGTCACTATTTTTGACAAAATCAACACCACCCGGAAACAGAACCAGAAAAACCTTTTCACTAACAGTTAAAGGCGTTGCAGCACCAACTACAAAAACTGAACCGACTCAACCGTTCTCAGAAGCTGAAAGGAACGATTTTGATGATGAATTTGAGGATGAGAGTTCTTCCTCCAGGTTTTCATGGAGAGATCATTGGTACCCAGTTTCGTTGATTGAAGATCTGAACCCCAGCTTGCCAACACCGTTTCAGCTTCTGGGTCGTGAAATTGTGATTTGGTATGATAATTCCAAATCTCAATGGGTTGTTTTTGATGATAAATGTCCTCACCGTCTTGCTCCTTTATCTGAAGGAAGGATAGATGAGGGAGGAAACTTGCAGTGTTCATATCATGGGTGGTCATTTGATGGGAGTGGAGGTTGTGCTATGATCCCTCAGGCTTCACCTGAAGGTCCTGAATCGCGTGCTGTTCGATCTCATAGAGCTTGTGCAACCAGGTTTCCTACCTTGGTGTCTCAAGGATTGCTCTTTGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCAAATGCTTCCAAACCTCCAATGTTGCCTGATGACTTTGTAAAACCAGAGTTTGCGACGGTGAATATTCAGCGCGATCTGTTTTATGGCTATGATACTCTCATGGAGAATGTCTCTGATCCTTCTCATATTGATTTTGCTCATCACAAGGTTACAGGGAGGAGAGATAGAGCCAAGCCGCTTCCGTTCAAGATGGATTCACGTGGTTCATGGGGATTTTCAGGAGCTAATGAAGGGAACCCGAGGATCAGTTCCAAGTTTATCGCACCATGTTATTACATCAACAAGGTTGAGATTGATACCAAACTCCCAATAGTCGGTGACCAGAAATGGGTAATATGGATATGTTCTTTCAATGTCCCCATGGCACCGGGTAAGACTCGCTCCATTGTTTGCAGTGCTCGAAATTTCTTCCAGTTCACAGTGCCAGGGCCTGCCTGGTGGCAAGTGGTTCCTAGATGGTATGAACATTGGACTTCAAACAAAGTATATGATGGAGACATGATTGTCCTTCAAGGTCAAGAAAAAGTCTTTCTCGCACAAACCGAGCAAGGCGGTGACATTAACAAACAATACACAAGCCTCACCTTCACGCCGACACAGGCTGATCGATTTGTGTTGGCATTTAGAAATTGGCTGAGGCGACACGGCAATGGACAACCGGAATGGTTCAGCAAGAGCAGCTCGCCATTGCCATCCACCGTACTATCAAAACGCGAGATGTTGGATAGATTTGAACAGCACACACTAAAGTGTTCATCTTGTAAAGGAGCTTACGAGGGATTCAAAACATGGCAGAAAATACTGATTGGTGCAACAGTTCTGTTTTGTGCAACTTCTGGGATTCCATCCGATACCCAGCTGCGCGTAGTTCTGGCTGGACTCGCTGTTGTCAGCGCAGCCTTAGCTTTTACTGTACACCAACTAGAAAAGAATTTTGTTTTCGTTGATTATGTGCACGCCGAAATCGATTGA 1599 0.4472 MALLHTLSPLPKPLLSSSFTKKSLFLTKSTPPGNRTRKTFSLTVKGVAAPTTKTEPTQPFSEAERNDFDDEFEDESSSSRFSWRDHWYPVSLIEDLNPSLPTPFQLLGREIVIWYDNSKSQWVVFDDKCPHRLAPLSEGRIDEGGNLQCSYHGWSFDGSGGCAMIPQASPEGPESRAVRSHRACATRFPTLVSQGLLFVWPDENGWEKANASKPPMLPDDFVKPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKMDSRGSWGFSGANEGNPRISSKFIAPCYYINKVEIDTKLPIVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFTVPGPAWWQVVPRWYEHWTSNKVYDGDMIVLQGQEKVFLAQTEQGGDINKQYTSLTFTPTQADRFVLAFRNWLRRHGNGQPEWFSKSSSPLPSTVLSKREMLDRFEQHTLKCSSCKGAYEGFKTWQKILIGATVLFCATSGIPSDTQLRVVLAGLAVVSAALAFTVHQLEKNFVFVDYVHAEID 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00496 532 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 11 478 - -
Vifa6g00496 532 Gene3D - 82 224 IPR036922 GO:0051537
Vifa6g00496 532 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 87 199 IPR017941 GO:0051537
Vifa6g00496 532 Gene3D - 225 428 - -
Vifa6g00496 532 Pfam Pheophorbide a oxygenase 295 390 IPR013626 GO:0010277
Vifa6g00496 532 SUPERFAMILY Bet v1-like 194 428 - -
Vifa6g00496 532 SUPERFAMILY ISP domain 80 205 IPR036922 GO:0051537
Vifa6g00496 532 Pfam Rieske [2Fe-2S] domain 86 170 IPR017941 GO:0051537
Vifa6g00496 532 CDD Rieske_RO_Alpha_PaO 70 210 - -
Vifa6g00496 532 MobiDBLite consensus disorder prediction 47 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00496 Vifa-Chr6 192330329 192332748 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00496 K13071 - gmx:100812162 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00496 6 192330329 192332748 Vifa6g00496 6 192330329 192332748 ECH