Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00459 ATGGCTCGAAAGAGTGCTAAGAAAATGGTGGTTAAATCCACTAAGAAAGTCGTTGAAGAAAGTGTTCAAGTTTCAGTTATAAGCAGCAACAAGAGACTAACACGTAGAAACAAAGATGCTGAAGCAGAAGAACAAGAAAAAGAGCAAGTATTAAGAGTCATTCCTGTTCATGAAGCAAAAGGAGACGATTCAACTTCAGGCACAACAACAATCTCTAGTGAAAACAAAAACAATGACCAGGAAGAACAAAACAGAAACATTAATATCATCAGAGAGGAGATGAAGAAGAGCAAGACAGAGAAAGTGAGTAAGAAGAAGAGGAAGAAGAGTGTTGAAGGGTACCAAAGGTATGTGTACAAGGTGTTGAAACAAGTGCATCCTGAAATGGGAGTTTCATCGAAATGCATGGTGATTTTGAACAATTTTATGAATGATATGTTTGAGAGACTAGCTAGTGAGGCTAGTAAGTTGAAGGATTATACAGGAAACATGACATTGTCATCAAGGGAGATTCAAGGAGCAGTTAAGCTTGTTTTGCCTGGTGAGCTTGGGAAACATGCCATTGCTGAAGGGATTAAAGCTGTCAACAACTATACAGCTTATCAATCTGCATCATGA 618 0.3835 MARKSAKKMVVKSTKKVVEESVQVSVISSNKRLTRRNKDAEAEEQEKEQVLRVIPVHEAKGDDSTSGTTTISSENKNNDQEEQNRNINIIREEMKKSKTEKVSKKKRKKSVEGYQRYVYKVLKQVHPEMGVSSKCMVILNNFMNDMFERLASEASKLKDYTGNMTLSSREIQGAVKLVLPGELGKHAIAEGIKAVNNYTAYQSAS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00459 205 Gene3D Histone, subunit A 69 201 IPR009072 GO:0046982
Vifa6g00459 205 Pfam Core histone H2A/H2B/H3/H4 67 177 IPR007125 GO:0003677
Vifa6g00459 205 MobiDBLite consensus disorder prediction 30 49 - -
Vifa6g00459 205 FunFam Histone H2B 69 201 - -
Vifa6g00459 205 MobiDBLite consensus disorder prediction 55 86 - -
Vifa6g00459 205 SUPERFAMILY Histone-fold 94 200 IPR009072 GO:0046982
Vifa6g00459 205 PANTHER HISTONE H2B 95 199 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00459 205 SMART h2b3 104 200 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00459 205 MobiDBLite consensus disorder prediction 32 49 - -
Vifa6g00459 205 MobiDBLite consensus disorder prediction 62 77 - -
Vifa6g00459 205 PRINTS Histone H2B signature 133 153 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00459 205 PRINTS Histone H2B signature 172 185 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00459 205 PRINTS Histone H2B signature 155 172 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00459 205 PRINTS Histone H2B signature 114 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00459 205 PRINTS Histone H2B signature 185 198 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00459 205 Coils Coil 73 100 - -
Vifa6g00459 205 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00459 Vifa-Chr6 180399012 180399629 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00459 K11252 - gmx:100786873 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00459 6 180399012 180399629 Vifa6g00459 6 180399012 180399629 ECH