Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00454 ATGCAGCCGAATTTGTTTCCCTTTGGAACCGCGCTGAGTAATCCGTTTATTTTCAATGGTGATTTGAGTGAAGGAGGTGGAATCGATAGTTCTAGGGTTTTCGTTTTGCTTCCGTTCTTCTTGCTCTCTCAAGGAGGAGCAATGGATTTGTCTAAGGTTGGGGAGAAGATCTTGAGTTCGGTTAGGTCTGCGAGATCGCTTGGATTGCTTCCTTCTGTTCCTGATCGGCCGGAGGTTCCAGCTCGAGCTGCTGCTGCAGCTGCCGTAGCTCGTGCTATTGCAGGGTTACCTCCTCATCAGAGGTATAGTCTTTCATCAAGTTCAGCAGAGCTGAGTTCAATATATGGAAGCATACCTCATGGCCCTGCGGTGGAGGAACTGGAGGATGAATTCTACGAGGAGGATTTTGATCCAATCAGGCATATTTTGGAGCGCGTTCCATCTGAAGAAAATGAGCTATCATATTTTGAAAAGCAGGCTGCCCTTAGATTAACACAATTGGATAAAGTAGCAGAGCATTTGTCTCGCCATGTTATGGAGCATCATGAAGTAATGGTGAAGGGGATGAATTTGGTCAGGGAATTGGAGAAAGACTTGAGAATTGCAAACGTCATCTGTATGAATGGAAGAAGACACCTGACATCTTCTATGAATGAGGTTTCAAGGGATTTGATTGTGAATTCTTATTCAAAAAAGAAACAAGCACTAATGGACATGCTTCCAGTCTTGACGGAACTTCAACGTGCACCAGACATGCAATCAACACTTGAATCTCTTGTAGAGGAAGGGAATTATTGGAAGGCATTTCAAGTCCTATCAGAGTTTTTGCAACTCTTAGATAGTTTGTCAGAGCTTTCTGTAATGCAGGAGATGAGTCGTGGTGTGGAGGTTTGGCTGGGAAGAACATTGCAGAAGTTGGATGCTCTTTTATTGGATGTGTGCCAGGAATTTAAGGAAGACGACTATATGACAGTAATTGATGCGTATGCATTGATAGGGGATACCACTGGTCTTGCTGAAAAGATACAAAGTTTCTTCATGCAAGAAGTCATATCCGAGACACACTCAGTGCTAAAGGCTATTGTGCACGAGGATGAGGAGGGACTTGCGCAAAATAGTAGTTGTTATTTAATTTCCAGGCTCACTTACAGCGACCTATGCCTTCAAATACCTGATTCTAAGTTTAGACAGTGCTTACTGAGAACGTTGGCTGTTTTATTTGACCTTATGTGTTCATACCATGAAATTATGGATTTTCAGCTAGAGAGAGAGGACTTACCAGCACAAACTTCTGATAAGTGCAACGAAGACATTTCTTGTGGTTTAGGTGTGGCTGGGGAAGTTGATTCAGACGTAAGAGCATGTAACAATTCTATGTCCAGTTCTGGGGATGTGATACATGGGTCATCTTCTATAAAAGCACCTTCAACAATCAGTTCACTGACTGAAACTACTGGTTCACCATACAGCGATTCTCATGATCCAGTGAATGAGGTTAGTAATGGGGAAAATTCAGCATCAAGCATCGATTCTCCATGGTACCATCTTCGGAAAGAAGCTACGACATTTGTCTCTCAGACCCTTCAAAGAGGGCGCAAGAATCTGTGGCATCTCACTGCAAGTCGTGTCTCAGTGTTGCTTTCTTCTGCTGCAGCTTGTTCTACAAGCATTCATCAATTCTTGAAAAACTATGAAGATCTGAGTGTGTTCATTTTGACTGGGGAAGCCTTCTGTGGGATTGAAGTGGTTGAGTTCAGGCAGAAGTTGAAGGTTGTTTGTGAAAACTATTTCATATCATTTCATCGACAAAATGTGCATGCCCTAAAAATGGTTTTGGAGAAGGAGACTTGGTTAAAATTGCCTCCAGATACTATTCAAATTATCAGTTTTGCTGGGCTTATTGGTGATGGAGCGCCATTGATTTCTTTATCTAGCAGTAAATCAATGAATGCTAATGCAATGCAATCCAATAATAAATCAGTGAACATGGTTCACACTGGTACAAAGAAGAGTGGGTTCTCTCATTGGATTAAAAATGGAAATCCTTTTCTGCCAAAATTATCAACCTCCAAAGAAGAAGATGAAAATGAGGATCTTCTTGCTGACTTTATTGATGAAGACAGTCAACTTCCAAGTCGAAGTTCTAAACCCCATCTTTCAAGATTTCACTCTTCACAGGGTAATGACGAAGAGAGTACAACGCAAACTGGATCTTCTCTTTGTCTTTTAAGGTCTATGGACAAATATGCAAGGCTTATGCAGAAACTAGAATTAATAAATGTTGAGTTCTTTAAGGGAATATGCCAGCTGTTTGAAATTTTTTTCTATCTTATATATGAAACATTTGGCCAGCTGAATACTACTAATTCAAGTGGAAAAAGCTCTGTTAACTCTCTTAATTATCGCTTGAGGACAGCATTATCTAGAATAAACCAAGATTGCGAGGAGTGGCTTAGACCCAACTCATCTTCACCAACATCTTTAAGTTCATCATTTGTACATGCAGAGTTGACACCTACAAATCCTCCAAATATGAATTTTGGCCACCCCTCGGGGACTGCTTTTAGTCTTAAGGAAAGATGTGTGGCTGTTGACACTATATCTGTTGTTGCTCGAATATTGAATAGATCCAAAGCTCACCTTCAATCAATGCTCTTGCAAAGTAATTCAACTGTACTTGAGGATTTCTTTGTTCATCTGGTGGATGCTGTACCAGATCTTATAGAGCATGTGCATCACACAACAGTAAGACAACTGCTTCACATTAATGGGTATGTTGAACGTGTTGCTAATTGTAAATGGGAAGTAAAAGAGCTTGGCATGGAGCATAATGGGTATGTTGATTTGTTGCTGGGGGAGTTTAAACACTTTAAAACACGACTTGTCCATGGAGGAATTCGTAAAGAGACTCAAGACATATTGCTGGACTATGGGCTAGACATTATTGCAGAAACTCTTGTGGAAGGACTTTCGCGGGTGAAGAGATGTAATGATGAAGGACGAGCTCTAATGTCATTGGATCTGCAGGTTTTGATAAATGGGCTAAAGCATTTTGCGTCATTGAATGTAAAGTCCAAGCTACAAATGGTGGAAACTTTCATTAAGGCTTACTACCTTCCGGAGACAGAATATGTACACTGGGCACGTGCGCACCCGGAATACAGTAAAACCCAGGTTGTTGGATTGATCAACCTTGTTGCCTCTATGAAAGGGTGGAAGAGGAAAACAAGGTTGGAAATACTGGAAAAGATTGAGTAA 3258 0.4107 MQPNLFPFGTALSNPFIFNGDLSEGGGIDSSRVFVLLPFFLLSQGGAMDLSKVGEKILSSVRSARSLGLLPSVPDRPEVPARAAAAAAVARAIAGLPPHQRYSLSSSSAELSSIYGSIPHGPAVEELEDEFYEEDFDPIRHILERVPSEENELSYFEKQAALRLTQLDKVAEHLSRHVMEHHEVMVKGMNLVRELEKDLRIANVICMNGRRHLTSSMNEVSRDLIVNSYSKKKQALMDMLPVLTELQRAPDMQSTLESLVEEGNYWKAFQVLSEFLQLLDSLSELSVMQEMSRGVEVWLGRTLQKLDALLLDVCQEFKEDDYMTVIDAYALIGDTTGLAEKIQSFFMQEVISETHSVLKAIVHEDEEGLAQNSSCYLISRLTYSDLCLQIPDSKFRQCLLRTLAVLFDLMCSYHEIMDFQLEREDLPAQTSDKCNEDISCGLGVAGEVDSDVRACNNSMSSSGDVIHGSSSIKAPSTISSLTETTGSPYSDSHDPVNEVSNGENSASSIDSPWYHLRKEATTFVSQTLQRGRKNLWHLTASRVSVLLSSAAACSTSIHQFLKNYEDLSVFILTGEAFCGIEVVEFRQKLKVVCENYFISFHRQNVHALKMVLEKETWLKLPPDTIQIISFAGLIGDGAPLISLSSSKSMNANAMQSNNKSVNMVHTGTKKSGFSHWIKNGNPFLPKLSTSKEEDENEDLLADFIDEDSQLPSRSSKPHLSRFHSSQGNDEESTTQTGSSLCLLRSMDKYARLMQKLELINVEFFKGICQLFEIFFYLIYETFGQLNTTNSSGKSSVNSLNYRLRTALSRINQDCEEWLRPNSSSPTSLSSSFVHAELTPTNPPNMNFGHPSGTAFSLKERCVAVDTISVVARILNRSKAHLQSMLLQSNSTVLEDFFVHLVDAVPDLIEHVHHTTVRQLLHINGYVERVANCKWEVKELGMEHNGYVDLLLGEFKHFKTRLVHGGIRKETQDILLDYGLDIIAETLVEGLSRVKRCNDEGRALMSLDLQVLINGLKHFASLNVKSKLQMVETFIKAYYLPETEYVHWARAHPEYSKTQVVGLINLVASMKGWKRKTRLEILEKIE 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00454 1085 Pfam Vacuolar-sorting protein 54, of GARP complex 124 419 IPR019515 -
Vifa6g00454 1085 PANTHER UNCHARACTERIZED 48 1085 IPR040047 GO:0032456|GO:0042147|GO:1990745
Vifa6g00454 1085 MobiDBLite consensus disorder prediction 477 507 - -
Vifa6g00454 1085 Pfam Protein of unknown function C-terminus (DUF2451) 855 1085 IPR019514 -
Vifa6g00454 1085 MobiDBLite consensus disorder prediction 708 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00454 Vifa-Chr6 177364857 177385866 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00454 K23288 - gmx:100788476 1776.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00454 6 177364857 177385866 Vifa6g00454 6 177364857 177385866 ECH