Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00452 ATGGCTCCGATTCCGCCTGAGAACGGCGTGGATGGAGACGACGAAAGAGAAGAAGAGGAGGACGAAGAAGACGAAGAAGAAGAAGTCGAAGATGACGAAGAAGAACCGAGACTCAAGTATCAGAGAATGGGAGGTAGCGTGCCGTCGTTGTTAGCTGCTGATGCGGCGTCGTGTGTGGCGGTGGCTGAGCGTATGATCGCACTTGGTACTCATGCTGGTACCATTCATATCCTTGATTTTCTCGGGAATCAGGTGAAGGAATTCTCTGCCCATGCTTCTGTTGTGAATGACCTTAGCTTTGACCTAGAAGGGGAATATATTGGAAGCTGTTCTGATGACGGATCGGTTGTTATAAACAGCTTGTTTACTGATGAGTTAATGAAATTTGAGTACCATCGCCCCATGAAGGCAATTGCTTTGGATCCTGATTATGCAAGGAAAATGTCTAGGAGGTTTATTGCTGGTGGTTTAGCTGGTAATTTATATTTAAATTCGAAGAAATGGTTGGGCTATCGGGACCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAGTGGAGAGCAAGTCTTGTTGCTTGGGCCAATGATGCAGGAGTGAAGGTTTATGATACTGCTAATGACCGGAGAATAACATTTATCGAAAGACCGCGAGGGTGTCCTCACCCTGAGCTTTTGCTTCCTCACTTGGTTTGGCAGGATGACACCGTCTTAGTTATTGGCTGGGGAACATCGATCAAAATTGCCTCAATTAAGACAAATTTCCATAAAGCCACGAATGGGGCATACAGGCAAGTTCCTTTGCTTGGTATGACCCAGGTTGATATTGTGGCATCTTTTCAAACCAGCTATTTCATCTCAGGACTTGCCCCTTTTGGTGATTCTTTGGTTGTTCTAGCTTATATTCCTGGAGAAGAAGATGGGGATAAAGATTTTAGTAGCTCAGCTCCTTCACGGCAGGGCAATGCACAAAGACCTGAAGTAAGAGTGGTAACATGGAATAATGACGAACTTTCAACAGATGCTTTACCAGTACATGGGTTTGAGCATTACAAGGCAAATGACTATTCCCTTGCTCACGCTCCCTTTTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGCGATGAACCACTATACTATATTGTATCCCCAAAGGACGTGGTTATTGCAAAGCCAAGGGATACTGAAGATCATATTGCTTGGCTTCTTCAACATGGATGTCATGAAAAAGCTTTAGCTGTAGTTGAATCTGGTCAGGGTCGCAGTGAACTACGTGATGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAGTATGGTGAAGCAGCTTCTTTATGTCCCAAGTTACTGCGAGGATCAGCTTCCGCATGGGAGAGATGGGTCTTCCACTTTGCACATCTACGTCAACTCCCTGTTTTGGTTCCTTACATGCCTACCGAAAACCCGAGACTACGTGATACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATTCATCTTTCCATAAGGATCTCTTATCCACTGTAAAATCCTGGCCATCTGTAATCTATTCTGCACCACCTGTTATTTCAGCCATTGAACCACAGCTTAATACTTCGTCCATGACTGACTTACTCAAAGAGGCATTAGCGGAGTTGTATGTAATTGATGGACAATATGAGAAAGCCTACTCATTGTATGCAGATCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACATGATGCAATTCAAGAAAAGGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCTCTGTTTATACAGAACAGGGAATTGATAAGTTCACCCGAGGTTGTGAAGCAACTTCTGAATGCCGATAACAAGTCTGAATGCAGATACTTTTTACATTTGTATCTTCATTCACTATTTGAAGTAAATTCACATGCTGGAAAAGATTTCCATGATATGCAGGTAGAACTCTATGCGGACTATGATCCCAAGATGCTGCTACCTTTCCTTCGCAGCAGTCAACACTATACCCTTGAGAAGGCTTATGAAATTTGCATCAAAAGAGACTTAATGAAGGAGCAAGTCTTCATCTTAGGAAGGATGGGAAACGCAAAAAAAGCCCTAGCTGTTATTATAAATAAACTGGGAGATATAGAGGAGGCTGTAGAGTTTGTTACCATGCAGCATGATGATGAACTCTGGGAAGAACTAATCAAGCAATGCCTTCACAAGCCTGAGATGGTGGGCATACTATTGGAGCACACCGTTGGAAATCTTGACCCCCTCTACATTGTAAATAAGGTGCCCAACGGGTTGGAAATACCCCGGCTTAGGGATCGGCTAGTTAAAATTATTACTGATTACAGGACGGAAACATCACTTAGACATGGATGCAATGATATCCTTAAGGCGGACTGTGTCAATCTTTTAGTTAAGTATCACAAAGAGGCAAAGCATGGAATTTCGTTAGGTAATGAAGGAGATGAGCCAAGAGTTAATACGAGTGATCATCGTGCCTCTCAGGCATTTGAGAAATCCTTGAGAACCATGGAGATGAAGTCGAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTTGACCCATTTTCTATACAGAATGTATCAGTCATTGTTTTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCACGGATTCTTACTACACTAATAGTATCACAAACGAGAGTGAAGCCACTTCCCATGAGGCAGTAACGTATGATGATTACAATGGCTACACGGATGATGCCAGTGATGAAAATGAAGAAGAAACCAAGTCGGATGGTCCTCGAATGCGTTGTATTTTGTGTACTACTGCTGCTGGTTGA 2859 0.4306 MAPIPPENGVDGDDEREEEEDEEDEEEEVEDDEEEPRLKYQRMGGSVPSLLAADAASCVAVAERMIALGTHAGTIHILDFLGNQVKEFSAHASVVNDLSFDLEGEYIGSCSDDGSVVINSLFTDELMKFEYHRPMKAIALDPDYARKMSRRFIAGGLAGNLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDRRITFIERPRGCPHPELLLPHLVWQDDTVLVIGWGTSIKIASIKTNFHKATNGAYRQVPLLGMTQVDIVASFQTSYFISGLAPFGDSLVVLAYIPGEEDGDKDFSSSAPSRQGNAQRPEVRVVTWNNDELSTDALPVHGFEHYKANDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGCHEKALAVVESGQGRSELRDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNSSFHKDLLSTVKSWPSVIYSAPPVISAIEPQLNTSSMTDLLKEALAELYVIDGQYEKAYSLYADLMKPEVFDFIDKHNLHDAIQEKVVQLMMLDCKRAVPLFIQNRELISSPEVVKQLLNADNKSECRYFLHLYLHSLFEVNSHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLMKEQVFILGRMGNAKKALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYHKEAKHGISLGNEGDEPRVNTSDHRASQAFEKSLRTMEMKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTTCLTDSYYTNSITNESEATSHEAVTYDDYNGYTDDASDENEEETKSDGPRMRCILCTTAAG 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00452 952 MobiDBLite consensus disorder prediction 1 37 - -
Vifa6g00452 952 SMART WD40_4 81 120 IPR001680 GO:0005515
Vifa6g00452 952 SMART WD40_4 169 205 IPR001680 GO:0005515
Vifa6g00452 952 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 607 754 IPR000547 GO:0006886|GO:0016192
Vifa6g00452 952 SMART ring_2 866 947 IPR001841 -
Vifa6g00452 952 Gene3D Tetratricopeptide repeat domain 542 814 IPR011990 GO:0005515
Vifa6g00452 952 FunFam Vacuolar protein sorting-associated protein 41 homolog 548 813 - -
Vifa6g00452 952 PIRSF Vps41 1 909 IPR016902 GO:0034058|GO:0046907
Vifa6g00452 952 Gene3D - 5 256 IPR015943 GO:0005515
Vifa6g00452 952 SMART CLH_2 607 754 IPR000547 GO:0006886|GO:0016192
Vifa6g00452 952 MobiDBLite consensus disorder prediction 910 939 - -
Vifa6g00452 952 SUPERFAMILY RING/U-box 860 903 - -
Vifa6g00452 952 CDD RING-H2_Vps8 864 897 - -
Vifa6g00452 952 Coils Coil 12 35 - -
Vifa6g00452 952 Pfam Region in Clathrin and VPS 609 750 IPR000547 GO:0006886|GO:0016192
Vifa6g00452 952 SUPERFAMILY WD40 repeat-like 56 254 IPR036322 GO:0005515
Vifa6g00452 952 FunFam Vacuolar protein sorting-associated protein 41 homolog 9 279 - -
Vifa6g00452 952 PANTHER VACUOLAR PROTEIN SORTING VPS41 15 917 IPR045111 GO:0006623
Vifa6g00452 952 MobiDBLite consensus disorder prediction 11 34 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00452 K20184 - gmx:100804340 1706.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00452 6 176610868 176635406 Vifa6g00452 6 176610868 176635406 ECH