Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00440 ATGGCTACACCATCTTCAACTCGATTAGATCTCGACGGAAACCCAATCAAACCGCTAACAATCTGCATGATCGGCGCCGGAGGTTTCATCGGTTCTCATCTCTGCGAGAAGCTGATGTCTGAAACCGCTCACAAAGTTCTCGCTTTGGATGTTTATAATGACAAAATCAAGCATCTTCTCGAACCGGAAACGCTTCCGTGGAATGGAAGGATTCAGTTTCATCGGCTTAATATTAAGAGCGATTCGAGACTTGAAGGTCTCATCAAGATGGCAGATCTGGTCATAAATCTGGCTGCAATTTGTACTCCTGCGGATTACAATACGCGTCCTTTGGATACCATTTACAGTAATTTCATTGATGCGCTTCCTGTGGTGAAGTACTGTTCTGAAACTAATAAGAGGCTTATTCATTTCTCTACTTGTGAAGTGTATGGGAAAACGATTGGTAGTTTTCTTCCTAAAGATAGTCCACTTCGGCAGGATCCTGCATACTATGTGCTTAAAGAAGATGTGTCTCCATGCATTTTCGGTTCAATCGAAAAGCAAAGATGGTCATATGCATGTGCAAAGCAGTTGATTGAGAGGCTGGTTTATGCTGAAGGTGCTGAAAATGGCTTGGAGTTTACTATTGTGAGGCCCTTTAATTGGATTGGACCCAGAATGGACTTCATTCCCGGCATTGACGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTCAGCAATAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTCGACGGTGGCGAATCCCAGAGAACCTTTGTTTACATCAAAGATGCCATTGAAGCTGTCCTATTGATGATTGAAAACCCTGCAAGAGCCAATGGCCACATCTTCAATGTAGGTAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCCGAAATGATGATCAAGGTCTATTCAAAGGTAAGTGGAGAACAGCCTCCTGAAAAATCTACAATCGATGTAAGCTCGAAAGAGTTTTACGGTGAAGGATATGATGACAGTGACAAGAGAATTCCTGACATGACCATAATCAACAACCAGCTCGGATGGAATCCAAAGACTTCCCTCTGGGACCTGCTCGAATCGACACTTACCTATCAGCACAGGACATATGCAGAAGCCATCAAGAAAGTCATTGCACAACCCATTGCGAGTTAA 1173 0.4408 MATPSSTRLDLDGNPIKPLTICMIGAGGFIGSHLCEKLMSETAHKVLALDVYNDKIKHLLEPETLPWNGRIQFHRLNIKSDSRLEGLIKMADLVINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSETNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDVSPCIFGSIEKQRWSYACAKQLIERLVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGESQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMIKVYSKVSGEQPPEKSTIDVSSKEFYGEGYDDSDKRIPDMTIINNQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAQPIAS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00440 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 373 IPR036291 -
Vifa6g00440 390 Gene3D - 19 381 - -
Vifa6g00440 390 FunFam UDP-D-apiose/UDP-D-xylose synthase 2 19 382 - -
Vifa6g00440 390 Pfam NAD dependent epimerase/dehydratase family 21 291 IPR001509 -
Vifa6g00440 390 CDD Arna_like_SDR_e 20 375 IPR045869 GO:0016831
Vifa6g00440 390 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 20 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00440 Vifa-Chr6 174318049 174320550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00440 19 385 Miscellaneous Gene Families AT1G02000 20.769 2.11e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00440 K12449 - gmx:100792879 744.962