Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00424 ATGGCTTTACTAACAAGACCTTGTTGTTCCTCGGTACGTCCCAAATACGTCGTCGTTCGATGCAATCAGAGTAGCGAGAACGTGGAATCATCGAGAAAGTCGCTTTCGTTCCCTCCATTGAAAGCGGGAAAGAGAGTGATTTTGGTTAGGCATGGACAGAGCACGTGGAACGCCGAAGGAAGGATCCAAGGTAGTTCTGATTTCTCTGTTCTTACCGACAGAGGTAAATCTCAGGCTGAGATTTCCCGCCAAATGCTCGCCGACGATAACTTCGACGCTTGTTTTGCAAGTCCTTTGGCACGATCAAAGAAAACCGCTGAAATCATTTGGGGACCTCGCCAACGACCGATTATTCACGAGTTTCATCTTAGAGAAATTGATTTGTACTCCTTTCAAGGTCTGTTGAAGAAGGAGGGAAAAGCGAGATTTGGTTCGGCTTTTCATCAATGGCAGGTGGATCCTGTGAATTTCATCATTGATGATCATTATCCTGTGAGAGAGTTGTGGGATCGTGCTAGGAACTGCTGGACTAAAATTCTAGCTCATGATAGCAGGTCTGTTCTTGTCGTTGCGCACAATGCTGTTAATCAGGCTCTTGTTGCCACAGCAATTGGTTTGGAGGCAGAGTACTTCAGAACTTTACTTCAGAGCAACTGTGGTGTAAGTGTGCTGGACTTCACTCCAAGACTGGAGGGAGACTCTCCCCACATTTGCCTTAATCGCTTAAACCAGACCCCTGGTTCACCTGTTGCCCGAGGGAAATCTGGAGGTAGAGAGGCAAGCAAGCAGATCATACTTGTTTGTAGTGGATCTACACAAGGAAATACAGAGGACGGTTTTATTTTTTCTGCTGATCTACCATTGAACATGCTTGGTGTTATTCAGTCTCAGAAATCTGCAGAGCTACTCCTTGATTTGAAAGTGAGTTCTATAATTAGCAGTCCTAACAAATCTTGTATTGAGACAGCCGTGGCCATTTCCCAGGTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTCTGTGCCACGCCATGTTGAGATGAAGCAGATGGAGAACCTTAATATTAAAACTATCTTTAAACAATCCAAAATGGATGAATCGAGTTTCCCTCGATTTCAGCCTGGATGGTTAAATAAAGTCGAAGATGACTCGAGAACAACATTATGGGATCGATCTGGAAAAGCCTGGCAATCCCTGCTCGATGAAATATCCGATGAATCTAAGTCAGGAGAAGTTGTAGTTGCAGTCTGTCATCCTGCGATTCACATAGGACTAATGGCGCACTGCCTTAACTTGACCAAGGAATGGCTGGGATCATTTCATCTCGATGCAGGGAGTGTTAGCGTCCTCGACTTCCCCGATGGACCTAAGGGAAGAGGCGTAATCAGGTGCATAAATTACACTGCCCATTTGGGGAGATGGTCCATCCCTATTACAAGACCAAAAGAGGATGTTGAAAAGTTTTAG 1467 0.4526 MALLTRPCCSSVRPKYVVVRCNQSSENVESSRKSLSFPPLKAGKRVILVRHGQSTWNAEGRIQGSSDFSVLTDRGKSQAEISRQMLADDNFDACFASPLARSKKTAEIIWGPRQRPIIHEFHLREIDLYSFQGLLKKEGKARFGSAFHQWQVDPVNFIIDDHYPVRELWDRARNCWTKILAHDSRSVLVVAHNAVNQALVATAIGLEAEYFRTLLQSNCGVSVLDFTPRLEGDSPHICLNRLNQTPGSPVARGKSGGREASKQIILVCSGSTQGNTEDGFIFSADLPLNMLGVIQSQKSAELLLDLKVSSIISSPNKSCIETAVAISQVQEAADCLGADSVPRHVEMKQMENLNIKTIFKQSKMDESSFPRFQPGWLNKVEDDSRTTLWDRSGKAWQSLLDEISDESKSGEVVVAVCHPAIHIGLMAHCLNLTKEWLGSFHLDAGSVSVLDFPDGPKGRGVIRCINYTAHLGRWSIPITRPKEDVEKF 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00424 488 Pfam Histidine phosphatase superfamily (branch 1) 46 228 IPR013078 -
Vifa6g00424 488 Pfam Histidine phosphatase superfamily (branch 1) 264 455 IPR013078 -
Vifa6g00424 488 CDD HP_PGM_like 263 463 IPR013078 -
Vifa6g00424 488 FunFam Putative 2-carboxy-D-arabinitol-1-phosphatase 255 475 - -
Vifa6g00424 488 SMART PGAM_5 263 425 IPR013078 -
Vifa6g00424 488 SMART PGAM_5 45 199 IPR013078 -
Vifa6g00424 488 CDD HP_PGM_like 45 232 IPR013078 -
Vifa6g00424 488 Gene3D - 45 232 IPR029033 -
Vifa6g00424 488 FunFam Phosphoglycerate mutase 44 248 - -
Vifa6g00424 488 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 260 454 - -
Vifa6g00424 488 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 48 57 IPR001345 GO:0003824
Vifa6g00424 488 Gene3D - 256 475 IPR029033 -
Vifa6g00424 488 SUPERFAMILY Phosphoglycerate mutase-like 44 229 IPR029033 -
Vifa6g00424 488 SUPERFAMILY Phosphoglycerate mutase-like 262 476 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00424 Vifa-Chr6 167477195 167481926 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00424 K22200 - gmx:100794084 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00424 6 167477195 167481926 Vifa6g00424 6 167477195 167481926 ECH