Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00364 ATGGGTGTACCAGCGTTTTATAGATGGTTAATCAACAAATATCCTGAAGTCATTGAAGATGCAAACACCAACACTACTCCAACTGTGGAATATGATCATCTTTATCTTGACATGAACTCCATTATCCACCCATGTTTTCATCCCAACGATGATAACATCAATACTTCTCCACCAACAACATTTGTGGAAGTGTTTGCAAATATATTTGACTACGTTGATCACCTTGTTGCCATTGTTAAACCTCGCAAGCTACTCTACATGGCTATCGATGGAGTAGCCCCACGAGCCAAAATGAATCAGCAAAGGACCAGACGTTATAGAACTGCTAAAGATGATGAAATGCTTGAAGCTGAGGAGGAGAGACTGAGGAAACAATTTGAAATGGAAGGAAAACAAGTTGTTCCTAAGCAAGAATGTGAAGTGTCTGATTCTAATATAATAACACCAGGAACTGAGTTCATGCATCAACTCTCTAAGGCTCTTAAAGCCTACATCTCTTCAAGAATATCCTCTGATTCATTATGGAAGGATATTATGGTAATTTTATCTGATGCTAATGTTCCTGGAGAAGGGGAACATAAGATTATGTCATTCGTTAGAAAACAGCGCGGACTTTCTGATTACAATCCCAACACTGTCCACTGCTTATATGGCTCGGATGCTGATCTTATAATGCTTGGACTGTCGAGCCATGAGCCTCATTTTTCAATTTTAAGAGAGGTAGTGCCTGAAGGAAATGCTGCTAAGAGGTTCAAGCTTTTGCATATTTGGTTGTTGAGGGAATATCTTGAACTTGACATGAAGATACAAGATCCTCCCAAGAATTTCATCGTTGATTTTGAGCGGATTGTTGACGATTTTATCTTCATTTGTTTCTTCGCTGGAAATGATTTTCTTCCTCATTTGCCATCTTTGGATATTTTTGAAGGGTCTATTGATTTACTTATGACTGTTTACAAGCAAGAGTTTCATAAACTTGGAGGATATCTTGTCGACATAAATAAGATTGGTGAGAAACATAGTGCTTTTGTGAAGCTATCAAGAGTTGAAAAATTCATACTTATGGTTGGTACATATGAAGAAAAAATCTTCAATAGAAGAAGTGCAATTAGAGCCAAGAAACTGAGAAGGCTTATTAGTGATCATGAAAACTTAAAGCAAAACAAACATGACGCGTATAATTTCTTCGATATTGAGAATGAAAATAGTTCAGATTGTGCTCTTCGCATTAAGAAGGCAGCAACTTCCAACAATGTTTTTCCTGTGTCTGATGAAGAAATATTGAAAAACACAAATGATTTAAAGGAGGAGTTGAAGAAATGCATTAAAGCTAAAGGGGACTTGTTTAAGAGTGGAGATTTCTTGACTGACAAGATAAAATTGGGAACCGTTGGCTTTAAAGAAAGATATTATAAAGAGAAATTTTCTGTGGATGGTTCCACCAACATTGAGATAAAAAGAAAAGAAGTAGTGCAGAAGTACACAGAAGGATTGTTGTGGGTTCTTGAGTATTATTTTTCAGGAGTTGCTTCATGGACATGGTTTTATCCATTCCACTATAGTCCATTTGCTTCAGACTTTAAGGGCATGGGTCAAGTGAGAGTAAAATTTGAGAAAGGTGTTCCATTCTTGCCTTTTGATCAACTCTTAAGTGTTCTTCCTCAAAGGAGTGCTCGTGCACTTCCCGAAGCTTATGCACAGTTGATGTTAGATAATCATTCTAAAATATTTGACTTGTTTCCTCAGCAATTCGAAGTTGACATAGAAGGAAAGCGCTTCAGGTGGATGGGCGTATGCAAACTTCCATATATGGATGAAAGAAGGCTTTTGGCTGAAACCAGACAACTCATAAATGGATTATCTGAACATGAAGCAATCAGAAACTCGGTTGAAGTTGATACGTTGTTTGTTAGTAAGAGTCATAAGTTGACAGAAAAAATTTGCTCACTAAGTTCAAACAAGCTGGATACGACCATAAGTGATGGCATTGGAGGCATCATAAGTCTTTGTCACAAGTGTGTTGAGCACAACAAACAAGAAGATTTTGTTTTCTGTGTCAAATACGAGCTACCTGTGAATAGTACAAGTCATTGTCATCATTTGCTATTTGGTGTAAACCTTCCTCAAAAGACAATTGTTGAAAACGACATAAATGAAACGGTTCTGTGGCACGAACATCAACAATATCCTAATCGTTTTGAAAGGTCAAATAATCAAGACAATTGGAGAAGTTCAAACAAAGAGGCTAGTGCTTCAAGGTTTCCAACTAATAGAACTGCGTTTGGTGGAAGAAGCTCTTCACAAAATGCACCTCCTGAATTCATCTACAAAGCTGGAGGTGTTGGATGGGGTTCAGGTAGAGGAAAACCAGGAAGAATTAATCATGAAACTCTAAATGATCGAATGTCATCGTTTTCTCCTTTTTACAAACAACAATCTAATTATCATGATGGATCTTACTATCATCATCAATGTTCGAATAATGTGCCTTATGGTCGAGGACGAGGACGAGGACAGAATTCTAATAGTGTGTATTCTGGGAAGAATGTTACTTCTAATTCCAATAACTCATTACAGTCTCAATGGAGTGAGTCAAAGGATAAGAGTCGTTGGTAA 2616 0.3727 MGVPAFYRWLINKYPEVIEDANTNTTPTVEYDHLYLDMNSIIHPCFHPNDDNINTSPPTTFVEVFANIFDYVDHLVAIVKPRKLLYMAIDGVAPRAKMNQQRTRRYRTAKDDEMLEAEEERLRKQFEMEGKQVVPKQECEVSDSNIITPGTEFMHQLSKALKAYISSRISSDSLWKDIMVILSDANVPGEGEHKIMSFVRKQRGLSDYNPNTVHCLYGSDADLIMLGLSSHEPHFSILREVVPEGNAAKRFKLLHIWLLREYLELDMKIQDPPKNFIVDFERIVDDFIFICFFAGNDFLPHLPSLDIFEGSIDLLMTVYKQEFHKLGGYLVDINKIGEKHSAFVKLSRVEKFILMVGTYEEKIFNRRSAIRAKKLRRLISDHENLKQNKHDAYNFFDIENENSSDCALRIKKAATSNNVFPVSDEEILKNTNDLKEELKKCIKAKGDLFKSGDFLTDKIKLGTVGFKERYYKEKFSVDGSTNIEIKRKEVVQKYTEGLLWVLEYYFSGVASWTWFYPFHYSPFASDFKGMGQVRVKFEKGVPFLPFDQLLSVLPQRSARALPEAYAQLMLDNHSKIFDLFPQQFEVDIEGKRFRWMGVCKLPYMDERRLLAETRQLINGLSEHEAIRNSVEVDTLFVSKSHKLTEKICSLSSNKLDTTISDGIGGIISLCHKCVEHNKQEDFVFCVKYELPVNSTSHCHHLLFGVNLPQKTIVENDINETVLWHEHQQYPNRFERSNNQDNWRSSNKEASASRFPTNRTAFGGRSSSQNAPPEFIYKAGGVGWGSGRGKPGRINHETLNDRMSSFSPFYKQQSNYHDGSYYHHQCSNNVPYGRGRGRGQNSNSVYSGKNVTSNSNNSLQSQWSESKDKSRW 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00364 871 MobiDBLite consensus disorder prediction 826 871 - -
Vifa6g00364 871 CDD PIN_XRN1-2-like 34 263 - -
Vifa6g00364 871 MobiDBLite consensus disorder prediction 833 864 - -
Vifa6g00364 871 Gene3D - 534 630 - -
Vifa6g00364 871 MobiDBLite consensus disorder prediction 732 772 - -
Vifa6g00364 871 Pfam XRN 5'-3' exonuclease N-terminus 1 240 IPR004859 GO:0003676|GO:0004527
Vifa6g00364 871 MobiDBLite consensus disorder prediction 732 773 - -
Vifa6g00364 871 Pfam Xrn1 helical domain 278 717 IPR041412 -
Vifa6g00364 871 Gene3D - 1 120 - -
Vifa6g00364 871 Gene3D - 121 296 - -
Vifa6g00364 871 PIRSF Exonuclease_Xrn2 1 249 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vifa6g00364 871 PIRSF Exonuclease_Xrn2 243 870 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vifa6g00364 871 PANTHER 5'->3' EXORIBONUCLEASE 1 857 IPR027073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00364 Vifa-Chr6 149558192 149562920 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00364 - - tpra:123924370 1335.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00364 6 149558192 149562920 Vifa6g00364 6 149558192 149562920 ECH