Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00307 ATGGTCATATACCTCTCTCCCTCTCCACCTTCCCATTCATCTCCCATCATTAAATTCTCCAATTCAAAGCGACCCATTTTAGAATCGCCATTAAAGTTCAAAACCCATTTCTCAAAATCACTTCTTTCTCCTTCATTCACTTCCCCAACCGTAAAACTCACCACCAAGAAGCAGTTTTTACACCAAAACAGAAATAGGGTTGTTGACTTTAAAACATGTGCTATTGGTGGATTTGATTATGGAAGCTTTGAAGGTCCTCAGTCTGTGCTTGAAGCTGCTGCTGTGTTGACAGCTATCATTGTTGTTCATGAAAGTGGTCACTTCCTTGCTGCTTCTCTTCAAGGGATTCATGTGAGTAAATTTGCTGTTGGGTTTGGTCCAATTTTAGCTAAGTTTAATGCAAAAAACGTTGAATATTCCATTAGAGCTTTTCCACTGGGTGGATTTGTAGGGTTCCCTGATAATGATCCAGATAGTGATATTCCTGTTGATGATGTAAATTTGCTTAAGAATAGACCAATCTTAGATAGAATCATTGTGGTTTCAGCTGGTGTTGTTGCAAATGTTGTTTTTGCATTAGTTATTATCTTTGTTCAAATCCTTGCTGTTGGTTTGCCTGTTCAAGAGATATTTCCTGGTGTGAATGTCCCCGAGGTTCGGCCTTTTTCGGCTGCGTCTCGAGATGGATTGCTTTCGGGTGATGTGATACTTGAAGTTAATGGAAATGAGCTTGTTAAACCTGGTCCTAATTCTGTTTCTGAAGTTGTTGATGTCATTAAGAGTAGTCCCAAAAAATATGTTTTGCTTAAGGTCAAGCGAGGGGGAGAAGATTTTGAAATTCGGGTAACACCGGATGAGAGTTTCGATGGAACTGGTAAAATTGGAGTTCAGTTGGCTCCGAATATTAAGTTATCTGAAGTTAGACCAAAAAACGTAGTGGAAGCTGTGACATTTACTGCGAAAGAGTTTTGGGGTTTATCGTCGAATGTTCTCGATGGGTTAAAGCAGACATTTTTGAACTTTTCTCAGACGGCTAGTAAGGTTTCGGGACCTGTTGCAATTATTGCGGTCGGTGCGGAAGTTGCACGGTCAAACATCGATGGTTTGTATCAATTTGCAGCCATACTCAATATTAACCTTGCTATTATCAACCTTCTTCCTTTGCCTGCTTTGGATGGAGGAACATTGGCGTTGATTCTCGTTGAAGCTGCTAGGGGAGGGAGAAAGCTACCTATAGAGGTGGAGCAACGGATCATGTCATCGGGAATTATGCTTGTTTTGATTCTCGGGTTATACCTTATTATTCGCGATACTCTTAACCTTGATTTTATCAAGGAAATGTTGTAA 1347 0.4031 MVIYLSPSPPSHSSPIIKFSNSKRPILESPLKFKTHFSKSLLSPSFTSPTVKLTTKKQFLHQNRNRVVDFKTCAIGGFDYGSFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPDSDIPVDDVNLLKNRPILDRIIVVSAGVVANVVFALVIIFVQILAVGLPVQEIFPGVNVPEVRPFSAASRDGLLSGDVILEVNGNELVKPGPNSVSEVVDVIKSSPKKYVLLKVKRGGEDFEIRVTPDESFDGTGKIGVQLAPNIKLSEVRPKNVVEAVTFTAKEFWGLSSNVLDGLKQTFLNFSQTASKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAIINLLPLPALDGGTLALILVEAARGGRKLPIEVEQRIMSSGIMLVLILGLYLIIRDTLNLDFIKEML 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00307 448 SUPERFAMILY PDZ domain-like 202 286 IPR036034 GO:0005515
Vifa6g00307 448 CDD S2P-M50_PDZ_RseP-like 89 440 - -
Vifa6g00307 448 Pfam Peptidase family M50 93 429 IPR008915 GO:0006508
Vifa6g00307 448 Pfam PDZ domain 218 273 IPR041489 -
Vifa6g00307 448 SMART pdz_new 201 275 IPR001478 GO:0005515
Vifa6g00307 448 CDD PDZ_metalloprotease 201 284 - -
Vifa6g00307 448 ProSiteProfiles PDZ domain profile. 203 274 IPR001478 GO:0005515
Vifa6g00307 448 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 84 444 IPR004387 GO:0004222|GO:0006508|GO:0016020
Vifa6g00307 448 Gene3D - 206 299 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00307 - - lang:109351773 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00307 6 125600639 125601985 Vifa6g00307 6 125600639 125601985 ECH