Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00305 ATGGCTAAGAGCTCATTCAAGACGGAACACCCACTCGAAAGGAGGCAGGCTGAAGCAGCTCGCATAAGAGAGAAGTATCCTGATAGAATTCCAGTAATTGTTGAAAGGGCACACAAGACTGATGTTCCTGAAATTGATAAGAAAAAGTATCTTGTTCCTGCTGATTTGACTGTTGGCCAGTTTGTGTACGTGGTGCGAAAGAGAATCAAGCTGAGTCCGGAGAAAGCCATCTTCATTTTTGTCAAGAACATCTTACCACCAACCGCGGCTATGATGTCTGCAATTTATGAAGAAAATAAAGATGAAGATGGATTTCTTTATATGACTTACAGTGGGGAGAACACCTTTGGAATGATGATGGTCTGA 366 0.4208 MAKSSFKTEHPLERRQAEAARIREKYPDRIPVIVERAHKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGMMMV 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00305 121 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Vifa6g00305 121 CDD Ubl_ATG8 12 114 - -
Vifa6g00305 121 Gene3D - 1 118 - -
Vifa6g00305 121 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 118 IPR004241 -
Vifa6g00305 121 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Vifa6g00305 121 FunFam Autophagy-related protein 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00305 Vifa-Chr6 125318213 125318943 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00305 K08341 - gmx:100301895 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00305 6 125318213 125318943 Vifa6g00305 6 125318213 125318943 ECH