Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00229 ATGGAAGATTGTTACTGCAACCTTGAAGTTGATGTTAATGGAGAAGAAACCTTCATGGTCAATAAGACTATTGTTACTGAGTATTCAAGAAAATTGGCTAAAGTATTTGGAAAATCAAGTGGTTGTAGTGGAAAGCTTAAGGTAATATTTCATGATTTTCCGGGAGGCGCGGAAGGTTTCGAGCTTATGTTAAGATTTTGTTATAACAATGGAAATGCTGAGTTAAGTCCTTCGAATCTGTTACTCGCGCGTACTGGTGCTGAATATATGGAGATGAATGAATCTGTCAAAAATGGTTCTAACTTAATGGATCAAACTGAAAAGTCGCTTCGAGGGATTGGTTATTGGTCGTGGTCGGAGATTTTGATTGGTTTGAAGCAATGTCAGAGTTTACTAGTTGAAGATTCTTCTGTGATGGTAGAGAGGTGTATGGATGCTGTGGTTGGGAGGTTGGTTTTGGCTAGTGAAGCAAGCCCGTGTCCATCGAGTTGTTCTAATGATAGTTCAGGGATTCGGTTTTCGTGTGACTCGAAAAGTACTGAGAGTATTAAGACGAGTTTCACTCGTTCCACATGGTGGTTTGAAGATCTATTGTTTTTGACTCCCCCGATGGTTCTCATGTTGGTAAAATCGATGCTTTCGAGTAAGTTGGATCATCATGTTATAAGCAGGTTTCTTCTCTTTTATCAGAAGGCGAAATTATCGAAGGCTTCTACAGATGAGAAATGCAAAGTCATAGAAATGGTGATAGATATGCATTATGAGATGGACCCGAGTTCTGTTTCTCTCAAGACATTATTCGGGATTGTTCGGGTAACTTTGTGTTTGAACATAAGTAAAAATTGTAGGAACAAGTTGGAGATTATGATTGGTTCGCAATTGGACCAAGTAACCTTGGACAATTTACTTGTTCCATCTCCCTATGGAATAAACTACTTATATGATGTGAACCTTGTTCTGAGATTTTTGAAAGCATTTCTGCGCCAAGGAAACGGTGCGGCCGCTCCCATTCGGATGAGGAAAGTTGCTAACTTAATAGATTTGTATATAGCTGAAATAGCTCCTGATCCTTGCTTAAAAACTTCCAAGTTTTTCGCTCTTGCCACAGCTCTGCCAGATTCTGCTAGGGATTCTTGTGATGACCTCTACCATGCAATGGACATGTATCTTGAGGTTCATACTCAATTATCACAAGAAGAAAGAATAAAGATATGCTGTGGTTTAAACTATGAGAAGCTTTCACCTCAAGCATGCTTACACCTTTCAAAGAACACAAAATTTCCATCAAAATCAGCAGTTCAAGCTCTCATATCTCAGCAATCTAAGCTCAAAAACTTACTCCAAGCTGCTACTCCCATTTCAACTCCATACAGCGATTCATCGTGCGCTTCGGCTCAAAAGAAAGAAAAAGACAATGAACAAGTTGTGTTGTATGCAAGCAATTTCGATACTCCACCTGATAACGAGAAACTCAAAGCACATTTGCAAGGAATGCAATGGAGGGTTATGGAGTTAGAGAAAATCTGTAGGAAAATGCAAACTCAGATGGCTAAGATGACAAAATCAAAAGCATCTAATAGTTATGGTAAATCTTTGCCAAAGCTTTGTTCATGA 1614 0.3903 MEDCYCNLEVDVNGEETFMVNKTIVTEYSRKLAKVFGKSSGCSGKLKVIFHDFPGGAEGFELMLRFCYNNGNAELSPSNLLLARTGAEYMEMNESVKNGSNLMDQTEKSLRGIGYWSWSEILIGLKQCQSLLVEDSSVMVERCMDAVVGRLVLASEASPCPSSCSNDSSGIRFSCDSKSTESIKTSFTRSTWWFEDLLFLTPPMVLMLVKSMLSSKLDHHVISRFLLFYQKAKLSKASTDEKCKVIEMVIDMHYEMDPSSVSLKTLFGIVRVTLCLNISKNCRNKLEIMIGSQLDQVTLDNLLVPSPYGINYLYDVNLVLRFLKAFLRQGNGAAAPIRMRKVANLIDLYIAEIAPDPCLKTSKFFALATALPDSARDSCDDLYHAMDMYLEVHTQLSQEERIKICCGLNYEKLSPQACLHLSKNTKFPSKSAVQALISQQSKLKNLLQAATPISTPYSDSSCASAQKKEKDNEQVVLYASNFDTPPDNEKLKAHLQGMQWRVMELEKICRKMQTQMAKMTKSKASNSYGKSLPKLCS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00229 537 PANTHER OS12G0117600 PROTEIN 6 518 IPR043454 -
Vifa6g00229 537 ProSiteProfiles NPH3 domain profile. 191 442 IPR027356 -
Vifa6g00229 537 SUPERFAMILY POZ domain 3 96 IPR011333 -
Vifa6g00229 537 ProSiteProfiles BTB domain profile. 6 70 IPR000210 GO:0005515
Vifa6g00229 537 Pfam NPH3 family 191 418 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00229 Vifa-Chr6 98711363 98714064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00229 4 518 EF-hand Containing Proteins AT3G44820 25.690 1.45e-51 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00229 - - psat:127105255 983.4