Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00212 ATGGAAACAAGATCTTCCAAACGCAAAAAGCTAGCTCAGATAGAACAACAGAATGATGCCAAAAAAACACCACCAACAGATCAAATCAGTGATCTACCTGATGCTGTCATTCATCAAATCCTTCTCTTGCTTCCAATCAAATGTGTCGCACAAATGAGTGTTCTTTCGAAAAGATGGAAGTTTCTTTGGACAACTTTTCCTGATCTTGATTTCACAACCCTTAATCCATTTCCATTTGTTTCACCAAAAGCTCGTAAAAAAGCTACCAACTTTGCAAAATTTAACCACCCTTTATCATCACAAAAACTTGATTTCATCACACAAGTTCTATCTATTCGCGACGCGAAGCAAAAAGACATAAGGGTTCTTTGCTTTCGCGCCCGATTAGGCTTTTCGCGTTTAAATAGCTTGATTCGTAATGCCATTAGGCATAATATTAGAGAACTTGATATAGAAGTTGAAACTGAATTTCAAACAGATGATTTTTTCAACTTTCCTAGATGTATTATTGGTAGTGAGTCTTTACAAGTTTTGAAACTGAAATCGGGTTTTCGTTTGCCTCCTTCGTCGATCATGAGAAACGGGTTTCAATCTTTGCATACATTGTCTCTATCATTAATCATTTTGTATAATCAGCCTTGTCTATCTGATATGTTCAATGAATCATCTTTTCCTGTTTTGAGAAATTTGCGACTCGATCTGTGCTTCGGATTAACATATATTCGCGTGGCTTGTCGCGCGCTAGAAGATTTGAACTTGGAAAGATGTTATCAGCTACAAGGTTTGGATGTTTGTGGTGCGAAAATTGAGAGAATGAGAGTAACTAGTTGTTTTGATGCTTTTTGTAGTAAGACTTGGGTGAGAATGAACGTGCCAAAGCTTGAAAATTTGGTTTGGAAATTTAATGCAGTTACTGATGTTGCTGTTTTTGAGAATTCGAATTTGTTGAATGAGGCTTCTATTGGTTTCTTTATGTTGAAAGAAGGTAAAGTTAATATGGGTAGGCTTCAAAGTGCTATCAACTTCTTCTCTGGATTGTCTCATGCTCATTCCTTGACTCTTGAAAACCAAACTATTGAGATTCTATCGAAGTACAATGTTTTTCTTCAGCCATTTTATAATCTTAAATCATTAGAGATTCATACTGGTTTGAAGAAGAGAAATGTTCAAGCATTAGCATTCCTATTCAGAAGCTCTCCTATTCTCAACACACTGATTCTGAAGATCATCGACGATGATTTGGGCGAAAGAAAACAATGGAATAGGGATTTATGGGATATGACAAACACAGAAGAAGAGAAGTATTGGGAGTCACAGATACCAAGTTTGAAGTCTTTTCTACAACACTTGAAAGTGGTTAAAATTCAAGGATTTCTTGATTGTGCAAATGAAGTTACATTAACAAAGTTTCTTCTGAAGCAAGGAAAGGTTTTGGAGAAAATGATATTGCGCAGAGGATATTCATATACAAGAGATACTCTGAGGAGACAAAAGATAAAGTCACAAATGATGGGATTTTCTTGGGCTTCTTCTAATGCCAAAGTCGAGTTTCAGTAG 1557 0.361 METRSSKRKKLAQIEQQNDAKKTPPTDQISDLPDAVIHQILLLLPIKCVAQMSVLSKRWKFLWTTFPDLDFTTLNPFPFVSPKARKKATNFAKFNHPLSSQKLDFITQVLSIRDAKQKDIRVLCFRARLGFSRLNSLIRNAIRHNIRELDIEVETEFQTDDFFNFPRCIIGSESLQVLKLKSGFRLPPSSIMRNGFQSLHTLSLSLIILYNQPCLSDMFNESSFPVLRNLRLDLCFGLTYIRVACRALEDLNLERCYQLQGLDVCGAKIERMRVTSCFDAFCSKTWVRMNVPKLENLVWKFNAVTDVAVFENSNLLNEASIGFFMLKEGKVNMGRLQSAINFFSGLSHAHSLTLENQTIEILSKYNVFLQPFYNLKSLEIHTGLKKRNVQALAFLFRSSPILNTLILKIIDDDLGERKQWNRDLWDMTNTEEEKYWESQIPSLKSFLQHLKVVKIQGFLDCANEVTLTKFLLKQGKVLEKMILRRGYSYTRDTLRRQKIKSQMMGFSWASSNAKVEFQ 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00212 518 Gene3D Ribonuclease Inhibitor 22 317 IPR032675 -
Vifa6g00212 518 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 28 490 - -
Vifa6g00212 518 CDD F-box_AtFBL13-like 29 64 - -
Vifa6g00212 518 SUPERFAMILY RNI-like 143 307 - -
Vifa6g00212 518 SMART 9598neu4hmm 444 518 IPR006566 -
Vifa6g00212 518 MobiDBLite consensus disorder prediction 1 16 - -
Vifa6g00212 518 Pfam F-box domain 29 64 IPR001810 GO:0005515
Vifa6g00212 518 Pfam FBD 444 483 IPR006566 -
Vifa6g00212 518 SUPERFAMILY F-box domain 25 108 IPR036047 GO:0005515
Vifa6g00212 518 MobiDBLite consensus disorder prediction 1 28 - -
Vifa6g00212 518 ProSiteProfiles F-box domain profile. 26 74 IPR001810 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00212 27 181 EF-hand Containing Proteins AT5G41840 25.926 8.32e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00212 - - adu:107477862 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00212 6 91850093 91851996 Vifa6g00212 6 91850093 91851996 ECH