Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00211 ATGGCTACCAACAACAACAGATCAAATATCTTCCAAGACTTGTTACCAATGATGGCCAACAAGCTAGGTGGTGAAGGTTTAATCAAAGAGCTATGCAACGGGTTTGACTTGTTGATGGACAAAGAAAAAGGTGTGATCACGTTAGATAGCTTGAGGAAAAACGCTGCTGTTTTGGGTCTTGAGGACATGAAAGAAAATGAACTTGTTAGCATGATGAAGGAAGGTGATTTGGATAGAGATGGAGCATTGACACAGATGGAGTTTTGTGTTTTGATGTTTAGGTTGAGTCCTGAATTGATGGAAGAGTCTTGGTTTTGGCTTGAGGAAGCATTGCAACATGAACTTGACAACAATAATAATTCTTTTTTCTAG 372 0.3898 MATNNNRSNIFQDLLPMMANKLGGEGLIKELCNGFDLLMDKEKGVITLDSLRKNAAVLGLEDMKENELVSMMKEGDLDRDGALTQMEFCVLMFRLSPELMEESWFWLEEALQHELDNNNNSFF 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00211 123 Gene3D - 9 123 - -
Vifa6g00211 123 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Vifa6g00211 123 Pfam EF-hand domain pair 42 94 IPR002048 GO:0005509
Vifa6g00211 123 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Vifa6g00211 123 SUPERFAMILY EF-hand 26 104 IPR011992 -
Vifa6g00211 123 PANTHER CALCIUM-BINDING PROTEIN KIC 9 117 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00211 Vifa-Chr6 91173967 91174338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00211 6 115 EF-hand Containing Proteins AT5G54490 62.162 4.45e-45 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00211 K24345 - gmx:100527206 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00211 6 91173967 91174338 Vifa6g00211 6 91173967 91174338 ECH