LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g00208	ATGTTTAAATTTTCTTGTTTTCATGTTAATCTCCACAACAACAAGGCAAAGAAAATAACTCAACCTTCTACTGAAACAATGGCAAGAGTTTTGCGAGATAGTTCCAAAATTTCAGTCAGGAAAGATCCGTCTATCACTAAGAACTTAGATTCATCACTTTCAAAACAGCAATCGAGTATGCTAATGAATGTCTCCGAGCATGATATTCTCGACCAGGATTCAGTTGAGCATGTTGGTAAGTTAGAGGATCTCGATAAGTTTAGCATTGAATTTGACGGAAAAGTTCGCCAAACTGGGCGTCTTAGGAAAAGTCAGTCGGAAAGTGTGCTTTGCCAAGTCATAACTGAGGGTGATCAAGGTCTGGAGTTTTCCAAAAGCCTCAATGACTCCCCAAATTCAAGTTGCAGCCCTAATGATCAATGCAAAACGAATTCAAACTGCGAGTTTCAAGTCATTCCTGGTCGTGACAATGATGGCTCAGGTTTTTCAATTGGAGATCCGACACATTCGGATATGGATGCTCATGAAATTTCTGATACTCCATTATCTGGCGATCTTCCTGGCGGCTCCACTGAACTGACTTCTGGTCCCAGTTCACCTACTTTAAGGAGGTCGCGTTCCTTACCCAATTTCAAAGCTCCTACGCTTTCATCTGGAAATATTCGTACTTTTAAACATGCATCATCAATGTCAAGATCTTCCGACGATCTTTGTGCTTTAGGCCTGAGGAAGAAAGATGTGTATATCAGCGTGTCTTATGATCAAATAGGGGAAACTCAAGAAAAAGAACGTAGTATGGAAAAAACTGAAGATTTTCGTATGGACAGATACTTTGAAGACGGCTTTGATTCTCATCTGCTTTCTGGCTTACCAAAGGACCGGATAATGCCAATTACAGACGATATAAGTGATGTTGAGCCCCTTCAAGGAGATTCCCCAGGTGAATTTCCTAACGAGGATTTTAAGGTTAAGCGTATTGAGGATTGGGTAATCGGTCTGCAGCAATGTGCACCACCTCTAGAGGATATAACTGAATTGCCTGAACCTGTTGATCCCATAGTTGATGTTAACCCCCCAATTGCCGTGACTCCTTCTGTTGTGGATCATAAGATCTCTCCAGGAATGGAAGCAGCTAAAAGATATATTTCTTCTTTAACTGCCAATGCCTCTGCAGCTCAGCTAGCAAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTGAAGGTGCTCAATTTGTCTGGAAACGGGATCGTAAAGATAACTGCTGGTGCTCTTCCTCGAGGACTTCACACGTTGAACTTGTCAAAAAACAATATCTCCACTATAGAGGGATTACGTGAACTTACGCGGCTTCGTGTCCTAGACCTCAGCTACAATCGCATACTAAGAATTGGACATGGTCTGGCATCCTGTTCTTCTCTAAAGGAGCTGTACCTGGCTGGAAACAAGATCGGTGAAGTCGAGGGTTTGCACCGTTTGTTGAAAATAAGTATCTTGGATCTCCGCTTTAACAAGATTTCAACTGCCAAATGTCTTGGACAACTTGCGGCCAACTATAATTCTTTGCTAGCTATCAACTTGGAAGGGAACCCTTGCCAGAAAAACGTTGGAGATGAACAAATTAAGAAATACCTGCAAGGCCTTCTTCCTCATCTTGTCTACTACAATCGTCAGCCTTTCAAAGCGAACGGTTTGAAGGACAGTGCAGATCGTGCAGTTCGACTAGGAATGAGCTCACAACAGTTTGATCGCGGTCTTAGAGTGGATCGCAAAACTACAAGGAAGGTGCCATCATCTACTCGGAGGCCATCAACCGGGTCCTCACCAAAACATTCCAAAGGAAAGCAAGGCCACCTCCCACCAATCGGAACAAAACCATCATCCCAAAGTCGCCATCATTTGGATTCTTTCGACAAAGCTTTGAGCTTGAATTCACGGAACTTCATGCGAAAGAGTCGCAGCGAGGGAACTCTTGAAGCTTTCTAA	1998	0.4304	MFKFSCFHVNLHNNKAKKITQPSTETMARVLRDSSKISVRKDPSITKNLDSSLSKQQSSMLMNVSEHDILDQDSVEHVGKLEDLDKFSIEFDGKVRQTGRLRKSQSESVLCQVITEGDQGLEFSKSLNDSPNSSCSPNDQCKTNSNCEFQVIPGRDNDGSGFSIGDPTHSDMDAHEISDTPLSGDLPGGSTELTSGPSSPTLRRSRSLPNFKAPTLSSGNIRTFKHASSMSRSSDDLCALGLRKKDVYISVSYDQIGETQEKERSMEKTEDFRMDRYFEDGFDSHLLSGLPKDRIMPITDDISDVEPLQGDSPGEFPNEDFKVKRIEDWVIGLQQCAPPLEDITELPEPVDPIVDVNPPIAVTPSVVDHKISPGMEAAKRYISSLTANASAAQLANHGLVVIPFLSAFVSLKVLNLSGNGIVKITAGALPRGLHTLNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIGEVEGLHRLLKISILDLRFNKISTAKCLGQLAANYNSLLAINLEGNPCQKNVGDEQIKKYLQGLLPHLVYYNRQPFKANGLKDSADRAVRLGMSSQQFDRGLRVDRKTTRKVPSSTRRPSTGSSPKHSKGKQGHLPPIGTKPSSQSRHHLDSFDKALSLNSRNFMRKSRSEGTLEAF	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g00208	665	MobiDBLite	consensus disorder prediction	184	214	-	-
	Vifa6g00208	665	ProSiteProfiles	Leucine-rich repeat profile.	477	498	IPR001611	GO:0005515
	Vifa6g00208	665	Pfam	Leucine rich repeat	410	465	IPR001611	GO:0005515
	Vifa6g00208	665	PANTHER	NISCHARIN RELATED	231	636	-	-
	Vifa6g00208	665	MobiDBLite	consensus disorder prediction	587	665	-	-
	Vifa6g00208	665	SMART	LRR_typ_2	408	431	IPR003591	-
	Vifa6g00208	665	SMART	LRR_typ_2	452	475	IPR003591	-
	Vifa6g00208	665	ProSiteProfiles	Leucine-rich repeat profile.	454	476	IPR001611	GO:0005515
	Vifa6g00208	665	MobiDBLite	consensus disorder prediction	156	214	-	-
	Vifa6g00208	665	MobiDBLite	consensus disorder prediction	602	616	-	-
	Vifa6g00208	665	Gene3D	Ribonuclease Inhibitor	368	549	IPR032675	-
	Vifa6g00208	665	ProSiteProfiles	Leucine-rich repeat profile.	432	453	IPR001611	GO:0005515
	Vifa6g00208	665	SUPERFAMILY	Outer arm dynein light chain 1	402	562	-	-
	Vifa6g00208	665	SMART	LRR_sd22_2	475	496	-	-
	Vifa6g00208	665	SMART	LRR_sd22_2	430	451	-	-
	Vifa6g00208	665	SMART	LRR_sd22_2	497	521	-	-
	Vifa6g00208	665	SMART	LRR_sd22_2	452	474	-	-
	Vifa6g00208	665	FunFam	Protein phosphatase 1 regulatory subunit pprA	369	550	-	-
	Vifa6g00208	665	Pfam	Leucine Rich repeat	474	489	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g00208	Vifa-Chr6	89595834	89598166	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g00208	-		-	lang:109355198	772.696

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa6g00208	6	89595834	89598166	Vifa6g00208	6	89595834	89598166	ECH