Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa6g00100 | ATGGCTGTTGACGCTTCTGATAAACCAAACTTGCCCAAAAAATTTGAGGATTACAGCGATGATGAAGATGATCAACCGTTATCTTTTGAAAGATACGCCATCAAGAATCCATTGCATTCTCAAGTAAAGAAAACCACTTATAGACAGATAACTGACGTGCCTTCCTCAAATGGCCAAAATTCTAAGCCTGTCAACACCTCCTCTAACAAGTCACCCGTAGCAAAGCCTCTTCTTGATGTTAAGAAACAAACAAAAGGTTATTGTGAAGATTTTGAGGATGACGATGATAATAAACCATTGAGTTCTACGTGTAAGATTAAATCTAATCATGGTAGCATAGTCGCTCCTGTTATCAAGAAATATTCTCATGACTCTGATTCAGATTCAGATGATGATGATGATGATGATGATGATGATAAGCCTATTTCAAAATTTCAGAAAGAGCGGCAAAATGGATCTAGCACAAGTAATAAACAGCAAAAGCCATCTGCTCTACCAGTTAAGAGAGAACTCGAAAATTGTGATTCCCCGCATTCTTCGGCTAAAAAGTCAAAGATCTCAGATTCAACAACTTCAATCAAAACTAAACAACTCTCTGTTAAGTGTGAAGTTAAAGCTGAGGAGGAAGATGATGATGATGATGATGATGATCTTCCTATTTCCCATAGAATTAACAAGTCACCAACACTAGCTGTTAAACCATCTTCCACAAACAAGATACTGGCAAAGGTTACTAAAGTTAATAAGTCTGGTTCAACATCTTTTAAGAAACAGATCAAGAACAAACAGACCAAGAACAAGTCAAAAAAATCCGGCACTGCCTCAGAATATTCCAAATCATCAAAACTTCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACGTTGGTTCATAATGGTGTCATTTTCCCTCCTCCTTACAAACCCCATGGGGTAAAAATGCTTTATATGGGGAGGCCTGTTGATTTGACACCTGACCAAGAGGAGGTTGCTACAATGTATGCGGTTATGCGTGATACAGATTACATGCAAAAAGATAGGTTCAAGGAAAATTTCTGGAATGATTGGCAAAAGTTGCTAGGAAAAAATCATGTAATTCAAAGCTTGAAAGATTGTGACTTTACCCCAATCTATGACTGGTGCCAAAGTGAAAAGGAAAAGAAGAAACAAATGACTACGGAAGAGAAGAAAGCTCTGAAGGAAGAAAAATTGAAGCAAGAGGAGAAATACACGTGGGCTATTGTTGACGGTGTTAAAGAGAAGGTTGGAAATTTCAGAGTTGAACCTCCTGGATTGTTCCGTGGCCGAGGAGAGCATCCCAAGATGGGAAGATTAAAAGCACGCATTCATCCAAGTGACATTGTAATTAATATTGGAAGTGATGCACCGGTTCCTGAATGTCCTATTCCTGGTGAAAGATGGAAGGATATAAGAAATGACAATACAGTTACATGGTTATGCTATTGGAGTGACCCAATTAGTCCAAAGCTATTCAAGTATGTGTTTCTGGCAGCTAGTAGTTCCTTGAAGGGTCAAAGTGACAAGGAAAAGTATGAGAAGGCTAGGATGTTGAAGGATTATATAGGGAACATCAGGGCTTCATACACAAAAGATTTTACGAGTAAGGATATTACAAAGCAGCAGATAGCTGTTGCTACTTATCTCATTGATAAACTGGCTCTGAGGGCTGGTAATGAGAAGGACGATGATGAAGCTGATACTGTTGGCTGCTGCACATTAAAAGTTGAGAATGTGACAAGAGAAACCCCCAACAAATTGAAGTTTAACTTCCTTGGTAAAGATTCAATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTTTATAATGCAATTTTGGAGTTCCAAAAAGGTAAAGGCTCTGGTACTGATCTCTTTGATAAGCTGGATACAAATAAATTGAATGCTCATCTGAAGGAACTCATGCCTGGCTTAACGGCAAAAGTTTTCCGTACATTCAATGCATCTATCACACTGGATGATAAGTTGAATAAAGACACTAAAGATGGAGATGCTGCAGAAAAGATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCAATCATCTGTAATCATCAACGGAGTGTTTCAAAATCTCACAGTGCACAAATGACAAAACTAAATGAGAAAATTGATGAACTTCAGGATGTTCTGAAGGAGCTGAAAGTAGATTTGGACAGGGCAAGAAAAGGAAAGTCCCCTACAAAGAGTTCAGATGGAAAAAGCAAACGAAGCTTAACTCCCGAAGTGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATTCAGAAAATGCAACGTGATATGAAGACAAAAGAAGATCTTAAAACTGTAGCATTGGGCACATCCAAGATAAACTATCTCGACCCCAGGATCACAGTTGCCTGGTGCAAGCGGCACGAGGTTCCCATTGAGAAGCTTTTCACAAAATCTCTGCTGGCAAAATTTGCTTGGGCAATGGATGTGGACCCAGATTTCAGATTTTGA | 2511 | 0.3875 | MAVDASDKPNLPKKFEDYSDDEDDQPLSFERYAIKNPLHSQVKKTTYRQITDVPSSNGQNSKPVNTSSNKSPVAKPLLDVKKQTKGYCEDFEDDDDNKPLSSTCKIKSNHGSIVAPVIKKYSHDSDSDSDDDDDDDDDDKPISKFQKERQNGSSTSNKQQKPSALPVKRELENCDSPHSSAKKSKISDSTTSIKTKQLSVKCEVKAEEEDDDDDDDDLPISHRINKSPTLAVKPSSTNKILAKVTKVNKSGSTSFKKQIKNKQTKNKSKKSGTASEYSKSSKLLPSSGDGQKKWTTLVHNGVIFPPPYKPHGVKMLYMGRPVDLTPDQEEVATMYAVMRDTDYMQKDRFKENFWNDWQKLLGKNHVIQSLKDCDFTPIYDWCQSEKEKKKQMTTEEKKALKEEKLKQEEKYTWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGRLKARIHPSDIVINIGSDAPVPECPIPGERWKDIRNDNTVTWLCYWSDPISPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRASYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTRETPNKLKFNFLGKDSIKYENTVEVELPVYNAILEFQKGKGSGTDLFDKLDTNKLNAHLKELMPGLTAKVFRTFNASITLDDKLNKDTKDGDAAEKIVVYQHANKQVAIICNHQRSVSKSHSAQMTKLNEKIDELQDVLKELKVDLDRARKGKSPTKSSDGKSKRSLTPEVLEKKISQTNAKIQKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKLFTKSLLAKFAWAMDVDPDFRF | 836 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa6g00100 | 836 | MobiDBLite | consensus disorder prediction | 251 | 290 | - | - | |
| Vifa6g00100 | 836 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 288 | 505 | IPR036202 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vifa6g00100 | 836 | FunFam | DNA topoisomerase I | 379 | 504 | - | - | |
| Vifa6g00100 | 836 | Pfam | C-terminal topoisomerase domain | 768 | 836 | IPR025834 | - | |
| Vifa6g00100 | 836 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 293 | 504 | IPR008336 | GO:0003677|GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | Coils | Coil | 705 | 739 | - | - | |
| Vifa6g00100 | 836 | Gene3D | - | 309 | 392 | IPR013034 | GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | MobiDBLite | consensus disorder prediction | 736 | 758 | - | - | |
| Vifa6g00100 | 836 | PRINTS | Eukaryotic DNA topoisomerase I signature | 789 | 800 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | PRINTS | Eukaryotic DNA topoisomerase I signature | 433 | 442 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | PRINTS | Eukaryotic DNA topoisomerase I signature | 594 | 610 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | PRINTS | Eukaryotic DNA topoisomerase I signature | 549 | 568 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | PRINTS | Eukaryotic DNA topoisomerase I signature | 572 | 586 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | PRINTS | Eukaryotic DNA topoisomerase I signature | 652 | 666 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | Coils | Coil | 382 | 410 | - | - | |
| Vifa6g00100 | 836 | Coils | Coil | 763 | 783 | - | - | |
| Vifa6g00100 | 836 | CDD | Topo_IB_C | 513 | 706 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | FunFam | DNA topoisomerase I | 656 | 836 | - | - | |
| Vifa6g00100 | 836 | MobiDBLite | consensus disorder prediction | 268 | 290 | - | - | |
| Vifa6g00100 | 836 | Gene3D | - | 656 | 836 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vifa6g00100 | 836 | SMART | topeu | 433 | 809 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vifa6g00100 | 836 | Gene3D | Topoisomerase I; Chain A, domain 3 | 507 | 655 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | Gene3D | DNA Topoisomerase I, domain 2 | 289 | 504 | IPR013030 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Vifa6g00100 | 836 | FunFam | DNA topoisomerase I | 507 | 655 | - | - | |
| Vifa6g00100 | 836 | MobiDBLite | consensus disorder prediction | 39 | 73 | - | - | |
| Vifa6g00100 | 836 | SUPERFAMILY | DNA breaking-rejoining enzymes | 507 | 833 | IPR011010 | GO:0003677 | |
| Vifa6g00100 | 836 | PANTHER | DNA TOPOISOMERASE I | 120 | 836 | - | - | |
| Vifa6g00100 | 836 | MobiDBLite | consensus disorder prediction | 82 | 101 | - | - | |
| Vifa6g00100 | 836 | MobiDBLite | consensus disorder prediction | 183 | 198 | - | - | |
| Vifa6g00100 | 836 | MobiDBLite | consensus disorder prediction | 9 | 29 | - | - | |
| Vifa6g00100 | 836 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 782 | 800 | IPR018521 | GO:0003677|GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | FunFam | DNA topoisomerase I | 308 | 392 | - | - | |
| Vifa6g00100 | 836 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 507 | 731 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Vifa6g00100 | 836 | MobiDBLite | consensus disorder prediction | 147 | 163 | - | - | |
| Vifa6g00100 | 836 | MobiDBLite | consensus disorder prediction | 1 | 232 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa6g00100 | Vifa-Chr6 | 32061189 | 32067243 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa6g00100 | K03163 | - | gmx:100799837 | 1197.57 |