Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00097 ATGGCTATTGCAGCAGTTATTGGACTGAATGGAGGAAAGAGGCTATTGAGTTCATCTTACCATTACTCAGATATTGTAGAAAAGTTTTCTCATGCCTCTGACTTTGCCTCCACACAGTATCACCTTCCTTCTTCAAAATCTCCTCCAATACTTGCAAAGAAATTATCAAAGTCTCCTCCAACTTCTCCACCATCTCAAAGCCACGATCACTCCATCAAAGCTCTTAAGGAACATGCTGTTACAGATTCAGAACAATGCTTTCAGGGATACACTTCTATTGACATAGACGTGGCAAATTATTCTTTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAACAATGGGGTCTTTCTTTTGAAAGGGAAAAAATCCGGAGGAAGGTGGCAGTCACTTGTTCTGGTGTTTCAGCCAGGCAAAGAAGAATCAATAGCAAAAGGAAGATCACTTCTAAAAGTGCTTCCTCAATGATGCACCTGAGGTCCACAATCAGTCCCGAACTCATTCAAAACCGTTTTAAGGGGTATGTCAAAGGTGTAGTGAGTCAGGAATTGCTCTCTCATGCTGAAGTTGTAAAGCTATCTGTGAAAATAAAAGCTGGCCTTTCCTTAGATGAGCATAAATCCAGACTGAAGGAAAGATTAGGATGTGAACCTTCTCATGATCAAGTTGCAACTTCGTTGAAGATTTCCCGTGCTGAACTACGAGCTAAAATAATAGAGTGCTCTTTAGCAAGAGAAAAGTTGACTATGAGCAATGTTCGCTTAGTTATGTCCATTGCTCAAAGATATGATAATATGGGAGCTGAAATGGCTGACCTTGTCCAGGGTGGTTTAATTGGATTACTTGGCGGGATTGAAAAATTTGACTCTTCAAAAGGGTGCAAGATTTCAACTTATGTTTATTGGTGGATACGGCAGGGTGTTTCAAGAGCTCTAGTTGGGAACTCAAGAACATTAAGATTGCCAACTCATTTGCATAACAGGTTATATTTGATCCGCAATGCCCAGAATAGACTTGAACAGAGAGGCGTTACTCCAACTATTGATAAAATTGCAAAATGTCTTAATATATCTCAAAAGAAAGTTAGTAATGCTACCGAGGCTATCAGCAAAATTTTCCCCCTTGATAGGGAGCCATTCCCCTCTCTGAATGGTCTTCCAGGAGACACTCATCATAGTTACATTGCAGATAAACAAGTTGAGAACATCCCGTGGAATGGAGTAAATGAGTGGGCTCTAAAGGAGGAAGTGAATGGACTCATTAATGCGACCCTTGTGGAACGAGAGAGAGAAATTGTTTGTCTTTATTATGGACTGAATAAAGAATGTAAAGAATGTCTTTCGTGGGAAGACATAAGTAAACGGATAGGTTTGTCGAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCCGCAAGGAAGAGGGAGATGGAAGCCATGCTTTTGAAGCATTGA 1479 0.4057 MAIAAVIGLNGGKRLLSSSYHYSDIVEKFSHASDFASTQYHLPSSKSPPILAKKLSKSPPTSPPSQSHDHSIKALKEHAVTDSEQCFQGYTSIDIDVANYSLEALLLLQKSMLEKQWGLSFEREKIRRKVAVTCSGVSARQRRINSKRKITSKSASSMMHLRSTISPELIQNRFKGYVKGVVSQELLSHAEVVKLSVKIKAGLSLDEHKSRLKERLGCEPSHDQVATSLKISRAELRAKIIECSLAREKLTMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLGGIEKFDSSKGCKISTYVYWWIRQGVSRALVGNSRTLRLPTHLHNRLYLIRNAQNRLEQRGVTPTIDKIAKCLNISQKKVSNATEAISKIFPLDREPFPSLNGLPGDTHHSYIADKQVENIPWNGVNEWALKEEVNGLINATLVEREREIVCLYYGLNKECKECLSWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00097 492 ProSitePatterns Sigma-70 factors family signature 1. 274 287 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vifa6g00097 492 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 173 320 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vifa6g00097 492 MobiDBLite consensus disorder prediction 42 71 - -
Vifa6g00097 492 PRINTS Major sigma-70 factor signature 450 465 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vifa6g00097 492 PRINTS Major sigma-70 factor signature 274 287 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vifa6g00097 492 PRINTS Major sigma-70 factor signature 465 476 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vifa6g00097 492 PRINTS Major sigma-70 factor signature 298 306 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vifa6g00097 492 Pfam Sigma-70, region 4 426 478 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vifa6g00097 492 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 318 371 IPR013324 -
Vifa6g00097 492 Gene3D - 321 371 IPR036388 -
Vifa6g00097 492 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 110 489 - -
Vifa6g00097 492 NCBIfam sigma-70 family RNA polymerase sigma factor 246 479 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vifa6g00097 492 Gene3D - 405 486 IPR036388 -
Vifa6g00097 492 Pfam Sigma-70 region 3 331 401 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vifa6g00097 492 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 406 482 IPR013324 -
Vifa6g00097 492 Pfam Sigma-70 region 2 253 319 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vifa6g00097 492 Gene3D RNA Polymerase Primary Sigma Factor 68 320 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00097 K03086 - gmx:100801884 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00097 6 30112013 30120282 Vifa6g00097 6 30112013 30120282 ECH