Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00087 ATGGCGCTTAAAACCCTATCCACTTTTTTAACACCTCTTTCTCTCCCAAATAACAAATTTCCAAAAATTCACACGAAACCTTCCCTCATTCTTTGCGAATTCTCACGTCCTTCCCTACCAGAAGGCACTGGCGCGGCTGCTCCGTCCCCCGGCGAGAAGTTCCTCCAACGCCACCAGTCATTTGAGTCAACTAAACTCATTCTCAAGGACAACAAAAAGACTAAAAAGAAAGACAAGCCTCTGAAACCTTCCAATTCTAATGCCGTTACTTCTTGCTATGGTTGCGGCGCTCCTTTGCAAACTTCCGATAACGATGCCCCTGGTTTCGTCGATCCTGAAACCTATGAGTTGAAGAAGAAACATCGCCAGCTTAGAACCGTTCTCTGTGGGCGGTGCTGCCTTTTATCTCATGGAAAAATGATAACTGCCGTTGGAGGACACGGAGGTTACTCTGGAGGGAAACAGTTCATTACCGCGGAAGACCTTAGACAAAAGTTGACTCATTTGCGTAATGCCAAAGCTTTAATTGTCAAATTGGTTGATGTTGTTGACTTCAATGGCAGTTTTTTGTCCCGAGTGCGAGATCTTGCTGGTGCTAATCCAATAATAATGGTGGTGACTAAGGTTGATCTCCTTCCAAGAGATACTGATTTTAATTGTATTGGGGATTGGGTTGTAGAGGCTATCACAAGAAAGAAACTGAATGTTCTCAGTGTCCATCTCACCAGTTCAAAATCATTGGTAGGAATAACTGGAGTGATATCAGAAATACAGAAAGAGAAGAAGGGAAGAGATGTTTACATTCTGGGTTCAGCTAATGTTGGGAAATCTGCTTTCATCAATGCCTTATTAAAGACAATGGCTATAAACAATCCTGTGGCTGCATCTGCACGAAGATACAAACCAGTACAGTCTGCTGTTCCTGGAACTACCTTAGGGCCAATTCCAATTAATGCTTTCCTTGGAGGAGGGAAACTGTATGACACTCCAGGAGTTCATCTCCACCATAGGCAAACTGCAGTCGTTCATTCCGAAGATCTATCCTCCCTTGCTCCTAAAAGCCGACTGAGGGGCCTATCTTTCCCGAGTTCTCAAGTATTTTTGGACAATACAAAGGAAGGTGCTCCAACAGTAAATGGCTTGAATGGATTTTCAATATTTTGGGGAGGTCTTGTTAGAATTGATGTCTTGAAGGCTTTACCAGAAACATGTTTGACATTTTACGGGCCCAAGCGGATACCAATTCATATGGTGCCCACAGAGAAAGCAGATGAATTTTATCAGAAAGAACTTGGAGTTCTGCTAACCCCACCAAGTAGTAGAGAGAAGGCTGAGAACTGGAGAGGGCTTGACTCAGAACGTAAATTGCAAATAAAATTTGAAGATGCTGAAAGGCCAGCCTGTGATATTGATATATCCGGTCTAGGATGGCTTACTGTTGAGCCGGTTAGTAGGTCGCACAAATTCAAACAACAAAAACCGATAGAGATTGCAGGCGAATTGCTTATAGCCATACACCTCCCCAAACCTGTTGAGATTTTTGTAAGGCCACCAATACCAGTAGGCAAGGCTGGGGCGGAGTGGTACCAGTATAGGGAATTAACAGATGAAGAGCAGGAAATGAGACCAAAATGGTACTTTTAA 1644 0.4349 MALKTLSTFLTPLSLPNNKFPKIHTKPSLILCEFSRPSLPEGTGAAAPSPGEKFLQRHQSFESTKLILKDNKKTKKKDKPLKPSNSNAVTSCYGCGAPLQTSDNDAPGFVDPETYELKKKHRQLRTVLCGRCCLLSHGKMITAVGGHGGYSGGKQFITAEDLRQKLTHLRNAKALIVKLVDVVDFNGSFLSRVRDLAGANPIIMVVTKVDLLPRDTDFNCIGDWVVEAITRKKLNVLSVHLTSSKSLVGITGVISEIQKEKKGRDVYILGSANVGKSAFINALLKTMAINNPVAASARRYKPVQSAVPGTTLGPIPINAFLGGGKLYDTPGVHLHHRQTAVVHSEDLSSLAPKSRLRGLSFPSSQVFLDNTKEGAPTVNGLNGFSIFWGGLVRIDVLKALPETCLTFYGPKRIPIHMVPTEKADEFYQKELGVLLTPPSSREKAENWRGLDSERKLQIKFEDAERPACDIDISGLGWLTVEPVSRSHKFKQQKPIEIAGELLIAIHLPKPVEIFVRPPIPVGKAGAEWYQYRELTDEEQEMRPKWYF 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00087 547 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 159 335 IPR030378 GO:0005525
Vifa6g00087 547 PANTHER NO-ASSOCIATED PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL 36 547 IPR044229 GO:0003924
Vifa6g00087 547 CDD YqeH 129 332 - -
Vifa6g00087 547 Pfam 50S ribosome-binding GTPase 266 336 IPR006073 GO:0005525
Vifa6g00087 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 336 IPR027417 -
Vifa6g00087 547 Gene3D - 160 336 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00087 K13427 - gmx:100781340 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00087 6 24316978 24327531 Vifa6g00087 6 24316978 24327531 ECH