Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00085 ATGCATCTACAAACTCCAATTATCACACTTTTCATGATCCTAAGCAAGTTCTCTTACATAGTGGAACCACTGGATCAAACAAATTCTGAACACTACTACCATGTACATGATGGAAGATTGATGAAAACAAAACATCAACATTTTGGTGACATAACAAGGACCAATAGAGATAACCTTTTCTCTTCAAAGTCTCGAGGAATGGTTAATGTTGATGACTTTGGAGCCAAAGCAGATGGAAGAGATGATAGGGAGGCATTTAAGAAGGCATGGATTGAAGCATGTTCTAAAGGATCTATTCTTGTTGTACCAAAAAATAGGATATATCGTCTCAAACCAATAACTTTTTCAGGTCCATGTCAACCAAATACTTCCTTTATGCTCTATGGAACAATCGAAGCTTGGCCTCAACTTTCAGCGTACAAAGAAGAAGATAGAAAATATTGGATTGTATTTGATAGTGTCGCCAATTTCAAAGTTGATGGTGGTGGCACTTTCAACGGCAATGGGAAAAAATGGTGGCAAAACTCCTGCAAATACAACAATAACCTTACATGCAATGATGAACCAAGACCACAAGCAGTGACATTCCATGGTTGCAAGAATTTGAGAGTGAAGAATATAAGGTTCAAAGATGCACAAAAAATGCATGTATCATTTGAGAGATGCTTCAATGTGTTTGTTTCGAATCTGGTTGTGAGAGCACCAGAAAATAGCCCCAATACTGATGGAATTCATGTAACAGAAACACAAAATATTCACATAACAAATTGTGATATTGGGACAGGTGATGATTGTATTTCAATAATTAGTGGATCAAAAAATGTTCAAGCTACGAATATCACATGCGGACCCGGACATGGAATCAGCATTGGAAGCTTGGGACGCGATAACACAGAAGCTGAAGTTTCAAATGTGATAGTGAATAAGGCCACCTTAAAAGGAACTAAAAATGGAGTGAGAATAAAAACATGGCAGGACAAACATTGGAAAGTTGATGAAATTAGATCAAACAAGTTTGACTTTGTTGGTTCTTGTTTCAATCACCAACCTTCTAGTTCTAAGTTCAAACTAAACTAA 1077 0.3677 MHLQTPIITLFMILSKFSYIVEPLDQTNSEHYYHVHDGRLMKTKHQHFGDITRTNRDNLFSSKSRGMVNVDDFGAKADGRDDREAFKKAWIEACSKGSILVVPKNRIYRLKPITFSGPCQPNTSFMLYGTIEAWPQLSAYKEEDRKYWIVFDSVANFKVDGGGTFNGNGKKWWQNSCKYNNNLTCNDEPRPQAVTFHGCKNLRVKNIRFKDAQKMHVSFERCFNVFVSNLVVRAPENSPNTDGIHVTETQNIHITNCDIGTGDDCISIISGSKNVQATNITCGPGHGISIGSLGRDNTEAEVSNVIVNKATLKGTKNGVRIKTWQDKHWKVDEIRSNKFDFVGSCFNHQPSSSKFKLN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00085 358 Gene3D - 52 348 IPR012334 -
Vifa6g00085 358 SMART pbh1 249 270 IPR006626 -
Vifa6g00085 358 SMART pbh1 222 248 IPR006626 -
Vifa6g00085 358 SMART pbh1 302 323 IPR006626 -
Vifa6g00085 358 SUPERFAMILY Pectin lyase-like 65 336 IPR011050 -
Vifa6g00085 358 ProSitePatterns Polygalacturonase active site. 279 292 IPR000743 GO:0004650|GO:0005975
Vifa6g00085 358 PANTHER - 67 334 - -
Vifa6g00085 358 Pfam Glycosyl hydrolases family 28 99 335 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00085 Vifa-Chr6 22822830 22824598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00085 44 334 Glycoside Hydrolase AT3G07970 57.383 3.60e-106 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00085 K01184 - gmx:100799134 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00085 6 22822830 22824598 Vifa6g00085 6 22822830 22824598 ECH