Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00082 ATGAATACCCTTGTATCAAAATCCAAACTTTCATCACCATCATCAAGTTCTAGGAGCAATGCCAGTACCTGTAGCACCACTGAAACCAATGATAGTTATAACGTACTAGGTCTTAACTGCAAATTACCTCCATTCACATCCTTTTCTCATCGCTCATTAGCAATTCTTTCGGGACACGTTGGTTCTGTTTCGTGTTTAGCCTTATGTGGTGAGTTCATATTGAGTGCTTCACAGGGCAAAGACATCATAGTATGGCAACAACCAGATTTAAGGTTGTTTGCCAAATTCGGGCAAGGCGACGGGTCTGTCAAAGCACTTGCCACCGTTGGTAACAAGGTTTTCACAGCTCATCAGGATAGCCGGATTCGTGTTTGGAAAGTGTCCAGGAGTTCGGAGAATGTGTTCAAGCTCCTCGATACACTTCCGACAACAAAGGACTATTTGGGGAAGTTTATGAAACAGAGTAATTATGTTCAAACGAGGAGGCATCACAAGAGGTTGTGGATTGAACACGCAGACAGCATTTCTTGTTTGGTTGTTCATAATGGGTTGGTTTATTCAGGGTCATGGGATAAGACACTTAAAGTGTGGGGTGTTTCCGATTTGAAGTGTTTGGAGTCAATTAAAGCGCACGATGATGCTATCAATGGGTTGGTAGCGTGTAAAGGGGTTGTTTATTCTGCTTCTGCAGATGGGAAGATTAAGGCATGGGGAAAAGGAAAAGAAGGGAAAAGTTTGCATTGTTTGAAATCTGTTTTAGAGGGTCATAAAGATGTTTCGTTTAATTCTGTTGTTGTTTCTGATGATGGGAAATGGGTTTATGGAGGTGGTTCTGATGGTTGTGTTATAGGGTATGGGTATGAAAGGAATAATGGTGGTTGTGAGAATTGGAAAATGGTTTGTGAGAGAAAGGCACATGAAATGGCTGTTTTGTGTATGTGTTTGATAGGTGAGTATTTGTGCACGGGGTCAGCAGATAAAAGTATAGGTATCTGGAAAAGAGAGTGTTTTGGTAAAGTTTGTAAAGTTGGGGTTATAACAGGACATGAAGGGCCTGTGAAATGTTTGCAAGCTTCACTGTCCAATAGAATTGGTGGTGGATTTTTGTTGTATAGTGGTAGTCTTGATAGAAGTGTCAGAGTTTGGTGGGTTCCAAAGTATGATAAAACACAAGTAGCATTGAATGATTCAATTCCTCATAACATGTTAGCAACATGCTGA 1221 0.4087 MNTLVSKSKLSSPSSSSRSNASTCSTTETNDSYNVLGLNCKLPPFTSFSHRSLAILSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGDGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLLDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLVVHNGLVYSGSWDKTLKVWGVSDLKCLESIKAHDDAINGLVACKGVVYSASADGKIKAWGKGKEGKSLHCLKSVLEGHKDVSFNSVVVSDDGKWVYGGGSDGCVIGYGYERNNGGCENWKMVCERKAHEMAVLCMCLIGEYLCTGSADKSIGIWKRECFGKVCKVGVITGHEGPVKCLQASLSNRIGGGFLLYSGSLDRSVRVWWVPKYDKTQVALNDSIPHNMLATC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00082 406 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 386 IPR045182 -
Vifa6g00082 406 Gene3D - 45 145 IPR015943 GO:0005515
Vifa6g00082 406 Gene3D - 156 243 IPR015943 GO:0005515
Vifa6g00082 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 207 IPR001680 GO:0005515
Vifa6g00082 406 Gene3D - 244 406 IPR015943 GO:0005515
Vifa6g00082 406 Pfam WD domain, G-beta repeat 248 282 IPR001680 GO:0005515
Vifa6g00082 406 Pfam WD domain, G-beta repeat 343 382 IPR001680 GO:0005515
Vifa6g00082 406 Pfam WD domain, G-beta repeat 170 197 IPR001680 GO:0005515
Vifa6g00082 406 SMART WD40_4 49 86 IPR001680 GO:0005515
Vifa6g00082 406 SMART WD40_4 89 126 IPR001680 GO:0005515
Vifa6g00082 406 SMART WD40_4 161 198 IPR001680 GO:0005515
Vifa6g00082 406 SMART WD40_4 246 286 IPR001680 GO:0005515
Vifa6g00082 406 SMART WD40_4 339 383 IPR001680 GO:0005515
Vifa6g00082 406 SMART WD40_4 201 238 IPR001680 GO:0005515
Vifa6g00082 406 SMART WD40_4 296 333 IPR001680 GO:0005515
Vifa6g00082 406 MobiDBLite consensus disorder prediction 1 28 - -
Vifa6g00082 406 SUPERFAMILY WD40 repeat-like 50 393 IPR036322 GO:0005515
Vifa6g00082 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 382 IPR001680 GO:0005515
Vifa6g00082 406 PRINTS G protein beta WD-40 repeat signature 185 199 IPR020472 -
Vifa6g00082 406 PRINTS G protein beta WD-40 repeat signature 320 334 IPR020472 -
Vifa6g00082 406 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
Vifa6g00082 406 FunFam BnaA09g28200D protein 158 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00082 Vifa-Chr6 22210487 22211707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00082 158 388 Miscellaneous Gene Families AT5G08390 22.222 5.03e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00082 - - psat:127106992 719.539