Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00073 ATGGATGGTTATGAAGCTACTAGGACTGTGTTTTCAAGGATCCAAAAAATGGACCCTGAAAATGCATCCAAAATCATGGGTGTACTTCTCATTCAAGACCATGGTGAGAAGGAAATGATAAGGTTAGCATTTGGTCCTGAATCACTTATTCATTCTCTCATTGTCAAAGCTAGAAAAGAGTTAGGACTACCTTGTAGTAATAACTCTCCACCAACACCTTCCACTCCTCTATCACCATCACCTTTCCTCTCAAGGCAAAACTCAACTTCTTCAAGGCTTACTAATGCTTTCAACCTTCCTCCTTCTCTAACCATCCCAAACCCTTCTTCTTCTCCTTCCTCCTCTTCAGCTTCTTGGGCTACCATCTCTGACTTTCATAGCCATGATGATTTAATAACCAGTCCCTACAATATGGTTCTACCCTCTTCTGCTGCTTCACCTTTCTATCCTAATGCTGCTTCAGATCCAGTTGATGATTTCCATCTCCAAGACCAACTTTCTTTCTTGAATGATGCTTCTGATTCTAGTACTCTCTTTGCTTCCTATGGCTGGGAAGGTAACTCTCTTCACAGGAGGAGTTGTTCAGTCAATGATACTTGTTTAGCTTCTGAGGACCCTAATTCTGGGTGGAAGCCTTGTCTTTATTATGCTAGAGGGTACTGTAAAAATGGTACTAGTTGTAGGTTCCTTCATGGTGGACTTGGAGATGCTGATGCAATTCTTGGGTCACCTAACAAAGTTGACATGTTGGATCACTGTCATGAACTCTTGAGATCTAAATCTAGTCATCCACAAAGATTGGCTGCTGCCGCTACTGTTGCTTCTCACCTCATGGCCTCTAACTCTTTCCCTTACTCACCAAAGTGCATGAATTTCCTTTTACAGCAGCAACATAATGATACTCAAAGAGCAGCAGCTGCAGCTCTAATGATGAGTGAGGAGTTGCAAAAATTTGGAAGGTCAAGGCTTGAAAGAAATGATTTTTCTTTGAATAGTCCTACTGGAATGATTAATCCAGCTTCAAGACAAATCTACTTGACTTTCCCAGCTGATAGTACTTTCAGAGAGGAAGATGTTTCCAATTACTTCAGCATTTATGGTCCAGTCCAAGATGTGAGGATTCCGTATCAGCCGAAACGTATGTTTGGGTTTGTTACTTTTGTTTATCCAGAGACAGTGAAGCTCATTTTATCTAAAGGAAACCCTCATTTCGTTTGCGATGCCCGTGTACTCGTTAAGCCTTACAAGGAGAAGGGAAAAATTCCAGACAAGAAGCATATGCAGCAGCAGCAGGTAGATAGAGATTTTTCACCATGTGGAACTCCGACTGGACTTGATGCTAGAGACCAATATGATCTTCAACTTGGTGGAAGAATGTTTTACAATACTCAAGACATGTTGTGGAGGAGGAAGCTAGAGGAACAAGCTGAACTACAGCAAGCAGCTTTTGAGCTTCAAAGTAGAAGGTTAATGGGTTTGCAACTTCTTGATATTAAGAGGCAACACCAACGTGCATTTTCTACTGGAAGTCCAATTCCTTCTCCTACTCAATCTCCTAACATGTTCAATCAAACTCTTGTTCTTCCTCCTTCTTTTCACAGAAGCTCAGAGTCCTCAGAGGAGAATGGTTCAAGTTCTGGTCCAGCTACTACTACTGCTTTAGAAATTGCTGGTCAACATTCAGTCAATCATGTTGGCAAGGAAGCTGTGGTCCATAGTGAAGGCAATGGAAATGGCAAGCAAAGCTCAAATCAGGAAGAAGAGCTTGATTTGCAAGAATGTTTGGAGCATAACCTTCCTGATAGCCCTTTTGCTTCACCTACAAAAGCTGATGGGGTAGACTTAGTAGCTCCTTTCTCTAATGGACCTTATGAGGCTATTGATTCAGATCCATCTGCTAACTCTAAATTTGGCACTAGTAGTAAATTAGTTCCAACATCAGCACCACCTCTTGATAGTATGACCTCTTTTAAATCCTATAATAACTGCCAATTACCAAGGTTCTCTTCTGGCCATGGAACTATTGGGATGTTTGCTGGCACCGGCGGCCCGATTGGCATTTAG 2064 0.4181 MDGYEATRTVFSRIQKMDPENASKIMGVLLIQDHGEKEMIRLAFGPESLIHSLIVKARKELGLPCSNNSPPTPSTPLSPSPFLSRQNSTSSRLTNAFNLPPSLTIPNPSSSPSSSSASWATISDFHSHDDLITSPYNMVLPSSAASPFYPNAASDPVDDFHLQDQLSFLNDASDSSTLFASYGWEGNSLHRRSCSVNDTCLASEDPNSGWKPCLYYARGYCKNGTSCRFLHGGLGDADAILGSPNKVDMLDHCHELLRSKSSHPQRLAAAATVASHLMASNSFPYSPKCMNFLLQQQHNDTQRAAAAALMMSEELQKFGRSRLERNDFSLNSPTGMINPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQPKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKIPDKKHMQQQQVDRDFSPCGTPTGLDARDQYDLQLGGRMFYNTQDMLWRRKLEEQAELQQAAFELQSRRLMGLQLLDIKRQHQRAFSTGSPIPSPTQSPNMFNQTLVLPPSFHRSSESSEENGSSSGPATTTALEIAGQHSVNHVGKEAVVHSEGNGNGKQSSNQEEELDLQECLEHNLPDSPFASPTKADGVDLVAPFSNGPYEAIDSDPSANSKFGTSSKLVPTSAPPLDSMTSFKSYNNCQLPRFSSGHGTIGMFAGTGGPIGI 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00073 687 MobiDBLite consensus disorder prediction 79 116 - -
Vifa6g00073 687 MobiDBLite consensus disorder prediction 506 526 - -
Vifa6g00073 687 Gene3D - 201 296 - -
Vifa6g00073 687 SUPERFAMILY RNA-binding domain, RBD 354 436 IPR035979 GO:0003676
Vifa6g00073 687 MobiDBLite consensus disorder prediction 65 116 - -
Vifa6g00073 687 SMART c3hfinal6 209 233 IPR000571 GO:0046872
Vifa6g00073 687 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 418 IPR000504 GO:0003723
Vifa6g00073 687 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 399 IPR000504 GO:0003723
Vifa6g00073 687 MobiDBLite consensus disorder prediction 531 550 - -
Vifa6g00073 687 MobiDBLite consensus disorder prediction 421 443 - -
Vifa6g00073 687 MobiDBLite consensus disorder prediction 632 649 - -
Vifa6g00073 687 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 212 232 IPR000571 GO:0046872
Vifa6g00073 687 CDD RRM_AtC3H46_like 344 413 IPR034365 -
Vifa6g00073 687 MobiDBLite consensus disorder prediction 629 649 - -
Vifa6g00073 687 SUPERFAMILY CCCH zinc finger 208 232 IPR036855 GO:0046872
Vifa6g00073 687 Gene3D - 297 434 IPR012677 -
Vifa6g00073 687 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 610 - -
Vifa6g00073 687 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 349 420 - -
Vifa6g00073 687 SMART rrm1_1 343 413 IPR000504 GO:0003723
Vifa6g00073 687 ProSiteProfiles Zinc finger C3H1-type profile. 207 234 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00073 Vifa-Chr6 18098719 18101521 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00073 - - gmx:100801341 922.924