Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03730 ATGACTTCTTTGAGCAGAGAGTTGGTGTTTCTGATACTCCAGTTTCTGGAAGAGGAGAAATTCAAAGACTCCGTGCATAGGCTTGAGAAAGAATCCGGGTTTTACTTCAATATGAAATACTTTGAGGAAAAAGTACAGGCAGGTGAATGGGAAGAAGTTGAGAAGTATTTATCAGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTGGAAGCACTCGATAGGCAAGACAAGCCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTATTTGCCACCTTCAATGAAGAACTATACAAAGAAATAACCCAGCTGTTAACTCTTACTAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAGGAATTATGCTGTTAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTGTTCCGTGATAAGCTTATCTTTCCTGCATTGAAGTCGTCAAGATTGCGGACATTAATCAATCAAAGTTTGAACTGGCAGCACCAGCTTTGCAAAAACCCAAGGCCAAACCCAGATATAAAAACTTTATTTATCGATCACTCATGTTCACCTTCCAATGGTCCTCTCGCACCAACACCTGTCAATCTTCCAGTTTCTGCTGTTGCAAGGCCTGCTGCTTATACTTCCCTTGGAGTGGGAGCTCATGGTCCCTTTCCACCTGCCGCAGCAACTACTAATGCTAATGCTTTGTCTGGTTGGATGGCCAATGCCTCAGTTTCGTCATCTGTCCAAGCTGCTGTTGTCACCGCATCACCCATACCGGTCCCACAGAATCAAGTGTGTATCTTGAAGCGTCCAAGAACACCTTCAACCACTCCTGGCATGGTTGAGTATCAGAATAGTGATCATGAACAGCTAATGAAAAGACTCCGGCCTACTCCTTCTGTGGAGGAGGTTTCTTATCCTTCGGCTCGACACGCCTCTTGGTCGCTGGATGATCTTCCAAGAACAGTAGCTATGTCTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCTCACCAAACCTTACTCCTCGTTGGTTCTAATAACGGTGAAATTTCGCTTTGGGAACTTGGTTTGCGAGAAAGGTTGGTGTCAAAACCATTCAAGATATGGGATATATCAGCATGCTCATTACCATTTCAGGCAGCTATGGTCAAAGAAACACCTATTTCTGTCAGGCGTGTCACATGGAACCTTGATGGAAGTTTTGTGGGTGTTGCATTCGCCAAACATTTGATTCACATATATGCCTTCAATGGATCAAATGAGCTTGCCCAGCGTATAGAGATTGATGCCCATATTGGTGGTGTGAATGATTTGGCATTTGCTCATCCAAATAAACAACTTTGTATTGTGACTTGTGGAGATGATAAGTTGATTAAGGTGTGGGATTTAACGGGACGGAGGTTATTTAACTTTGAAGGGCATGAGGCTCCAGTATATTCTGTCTGTCCTCATCACAAGGAGAACATTCAGTTCATATTTTCAACAGCCATTGATGGCAAAATAAAAGCTTGGCTATATGATAATATGGGTTCTAGGGTTGACTACGATGCCCCTGGTCACTGGTGTACTACAATGCTTTACAGTGCTGATGGAACAAGATTATTTTCTTGTGGGACGAGTAAAGATGGAGAGTCATTCCTTGTTGAATGGAATGAAAGTGAGGGAGCAATTAGGAGAACATACAATGGGTTCAGAAAGAAATCTGCCGGTGTAGTCCAGTTTGACACAACCCAGAATCGTTTTTTGGCTGCTGGTGAAGACGGCCAAATAAAGTTTTGGGACATGGACAACGTTAATCTTCTAACAAGCATCGATGCAGAGGGTGGACTACAGGGACTTCCACACTTGAGATTCAATAAAGAAGGAAATCTTCTTGCTGTCAGTACCGCAGATAATGGATTCAAAATTCTCGCTAATGCTGCTGGTCTTAGATCCCTAAGAACAAATGAAACTCCAGCATTTGAAGCATTGAGGTCTCCCATTGAATCTACTGCAAACAAGGTATCCGGCTCTTCTGTTAATATTGGTCCTGTCAGCTGTAAAGTGGAAAGGAGCTCCCCTGCGAGGCCTTCTCAAATTCTTAACGGAGTTGATCCTACGGTTAGAAATGTGGATAAACCCAGGACAGTGGAAGATGTAATAGATCGAACTAAATCATGGCAGCTCTCTGAAATTGTGGATCCTGCCCACTGTCGACTAGTTAGCATGCCTGACAGCCCAGATACTTCCTGCAAGGTTGTACGACTTTTATATACAAATTCTGGAGCTGGTATTTTGGCCCTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGTCGCGGAATGAACAGAATCCTAGTGGGAAGGCGACTGCCAGTGCTGCTCCGCAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAATGATGTCTCAGGTGTCAACCTTGAAGAAGCTGTTCCTTGCATTGCACTCTCAAAGAATGATTCATATGTTATGTCTGCATGTGGGGGAAAGGTTTCATTATTTAACATGATGACGTTCAAGGTAATGACAACATTCATGTCTCCACCTCCTGCCTCTACGTATCTGGCTTTCCACCCTATGGATAACAATATCATAGCCATCGGGATGGAGGATTCAACTATTCACATTTATAATGTTAGAGTGGATGAGGTGAAATCAAGATTGAAGGGTCACCAAAAGCGGATTTCTGGTTTAGCTTTTTCAACCAATCTTGGCATCTTGGTTTCATCTGGTGCTGATGCTAATCTCTGCGTGTGGAGTATTGATACATGGGAGAAAAGAAAATCCGTTCCTATACAACTACCTGTGGGGAAGGCTCCTGTTGGTGAAACTCGAGTACAGTTCCATTCAGACCAACTCCGGTTATTGGTATCACATGAGACCCAATTGGCAATCTATGATGCCTCTAAGATGGAACGCATTAGACAGTGGGTCCCACAAGATGTTCTGCCTGCTCCCATATCATATGCAGCTTATTCTTGCAACAGTCAGTTAGTTTATGCTACATTTTGTGATGGCAATACTGGGGTTTTTGATGCTGACAGCTTGAAACTAAGATGTCGCATTGCACCATCAACGTACTTCACACCAGCGACTTTAAACGGAGGCCAAGCGGTGTATCCTTTTGTTGTGGCAGCTCATCCACTAGAACCCAACCAATTTGCTCTTGGACTGACTGATGGGTCAGTGAAAGTGGTAGAGCCGAATGAATCAGAGGGAAAGTGGGGATCTAGTCCCCCAATGGACAATGGAATGGTGAACGGTAGGACAGCATCGTCTACAACAAGCAACCACACACCCGATCAGGGCACACAACGATAA 3393 0.4359 MTSLSRELVFLILQFLEEEKFKDSVHRLEKESGFYFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFATFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLIFPALKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSCSPSNGPLAPTPVNLPVSAVARPAAYTSLGVGAHGPFPPAAATTNANALSGWMANASVSSSVQAAVVTASPIPVPQNQVCILKRPRTPSTTPGMVEYQNSDHEQLMKRLRPTPSVEEVSYPSARHASWSLDDLPRTVAMSLHQGSSVTSMDFHPSHQTLLLVGSNNGEISLWELGLRERLVSKPFKIWDISACSLPFQAAMVKETPISVRRVTWNLDGSFVGVAFAKHLIHIYAFNGSNELAQRIEIDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSVCPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIRRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNVNLLTSIDAEGGLQGLPHLRFNKEGNLLAVSTADNGFKILANAAGLRSLRTNETPAFEALRSPIESTANKVSGSSVNIGPVSCKVERSSPARPSQILNGVDPTVRNVDKPRTVEDVIDRTKSWQLSEIVDPAHCRLVSMPDSPDTSCKVVRLLYTNSGAGILALGSNGVQKLWKWSRNEQNPSGKATASAAPQHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMSPPPASTYLAFHPMDNNIIAIGMEDSTIHIYNVRVDEVKSRLKGHQKRISGLAFSTNLGILVSSGADANLCVWSIDTWEKRKSVPIQLPVGKAPVGETRVQFHSDQLRLLVSHETQLAIYDASKMERIRQWVPQDVLPAPISYAAYSCNSQLVYATFCDGNTGVFDADSLKLRCRIAPSTYFTPATLNGGQAVYPFVVAAHPLEPNQFALGLTDGSVKVVEPNESEGKWGSSPPMDNGMVNGRTASSTTSNHTPDQGTQR 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03730 1130 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 908 1101 IPR011044 -
Vifa5g03730 1130 SUPERFAMILY WD40 repeat-like 564 796 IPR036322 GO:0005515
Vifa5g03730 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Vifa5g03730 1130 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Vifa5g03730 1130 SMART WD40_4 443 484 IPR001680 GO:0005515
Vifa5g03730 1130 SMART WD40_4 862 902 IPR001680 GO:0005515
Vifa5g03730 1130 SMART WD40_4 823 859 IPR001680 GO:0005515
Vifa5g03730 1130 SMART WD40_4 337 376 IPR001680 GO:0005515
Vifa5g03730 1130 SMART WD40_4 486 527 IPR001680 GO:0005515
Vifa5g03730 1130 SMART WD40_4 1050 1091 IPR001680 GO:0005515
Vifa5g03730 1130 SMART WD40_4 905 944 IPR001680 GO:0005515
Vifa5g03730 1130 SMART WD40_4 576 616 IPR001680 GO:0005515
Vifa5g03730 1130 SMART WD40_4 530 573 IPR001680 GO:0005515
Vifa5g03730 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vifa5g03730 1130 SMART ctlh 34 92 IPR006595 -
Vifa5g03730 1130 Gene3D - 565 672 IPR015943 GO:0005515
Vifa5g03730 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 594 625 IPR001680 GO:0005515
Vifa5g03730 1130 Gene3D - 829 1099 IPR015943 GO:0005515
Vifa5g03730 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Vifa5g03730 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Vifa5g03730 1130 MobiDBLite consensus disorder prediction 1107 1130 - -
Vifa5g03730 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1114 IPR027728 GO:0006355
Vifa5g03730 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 385 IPR001680 GO:0005515
Vifa5g03730 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 485 IPR001680 GO:0005515
Vifa5g03730 1130 Gene3D - 321 564 IPR015943 GO:0005515
Vifa5g03730 1130 SMART Lish 4 36 IPR006594 GO:0005515
Vifa5g03730 1130 SUPERFAMILY Putative isomerase YbhE 420 966 - -
Vifa5g03730 1130 SUPERFAMILY WD40 repeat-like 331 436 IPR036322 GO:0005515
Vifa5g03730 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 471 485 IPR019775 -
Vifa5g03730 1130 MobiDBLite consensus disorder prediction 1091 1130 - -
Vifa5g03730 1130 Pfam WD domain, G-beta repeat 345 375 IPR001680 GO:0005515
Vifa5g03730 1130 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Vifa5g03730 1130 Pfam WD domain, G-beta repeat 450 484 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03730 Vifa-Chr5 1199752321 1199761362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03730 449 658 Miscellaneous Gene Families AT5G08390 25.701 2.09e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03730 - - gmx:100808421 2006.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03730 5 1199752321 1199761362 Vifa5g03730 5 1199752321 1199761362 ECH