Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03686 ATGGCCAACACAATCACAACGACAAGTTTTCTAACACCGTTCCACTTCCATTCCCCTCGTTGTTCCATTCCCACACCCAATTCGGCTAAAGCTTTTACAGTTCCGAGGAGAAAAGCAATATCCTTAATCTTCACAACTTACATTCTCTCCGACATTGGTACAACATTAGCTCAACAACAACAACAACAACCTCGTAGGTTCCGAGAATATGTAGATTCATTTGATGGCTATTCGTTTAACTACCCATCTAATTGGATTCAAGTTCGAGGTGCTGGTGCTGATATTTTCTTCAGGGATCCTTATATTCTTGATGAGAATATTTCGGTTGAAGTTTCTTCACCTTCGTCTTCGAAATTCAAGACTGTGGAAGATTTGGGTCCGCCGGAAGAAGCTGGGAAGAAAGTTCTTGGTCAATATCTTACTGAGTTTATGTCTACTAGAATTGGTGTTAAACGTGAGTCTAGTATTCTTAACACTACTTCTAGAGTTGCTGATGATGGTAAATTGTACTATCAAGTTGAGGCGAATATAAAGTCCTATGCTAGTAACAATGAGCTTGCTGTTATGCCACAAGACAGGGTGGTTCGGTTGGAATGGGATAGGAGGTACTTGTCTGTTCTGGGAGTTGAGAACAATCAACTGTATGAGTTGAGGTTACAGGTGCCAGAAAATGTGTTTTTGGAGGAAGAGAATGAGCTTCGTCGAGTTATGGAGTCGTTTCGAGCGAATAAGATTCTTCGTTAG 744 0.4099 MANTITTTSFLTPFHFHSPRCSIPTPNSAKAFTVPRRKAISLIFTTYILSDIGTTLAQQQQQQPRRFREYVDSFDGYSFNYPSNWIQVRGAGADIFFRDPYILDENISVEVSSPSSSKFKTVEDLGPPEEAGKKVLGQYLTEFMSTRIGVKRESSILNTTSRVADDGKLYYQVEANIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQVPENVFLEEENELRRVMESFRANKILR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03686 247 SUPERFAMILY Mog1p/PsbP-like 68 241 IPR016123 -
Vifa5g03686 247 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 61 242 - -
Vifa5g03686 247 Pfam PsbP 66 241 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Vifa5g03686 247 NCBIfam photosystem II reaction center PsbP 48 241 - -
Vifa5g03686 247 PANTHER - 21 242 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03686 - - tpra:123890988 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03686 5 1185659216 1185660276 Vifa5g03686 5 1185659216 1185660276 ECH