Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03685 ATGTTGCAGTGCATTTTCCTTCTCTCCGATTCCGGAGAGGTAATTCTCGAGAAACAACTCACCGGCCACCGTGTTGATCGCTCCATATGCAACTGGTTCTGGGATCACGCCGTTTCTCAACCCGATTCCTTCAAGCAACAACCTGTGATTGCTTCTCCTACGCATTATCTTTTTCAAGTTTTTCGTGAAGGGATCACTTTTTTGGCGTGTACTCAAGTTGAAATGCCGCCTTTAATGGCTATTGAGTTTCTTTGTAGGGTGGCTGATGTGATCAATGATTATCTTGGGGGATTGAATGAAGATTCGATTAAAGATAACTTTGTTATTGTCTATGAGCTGCTGGATGAAATGATAGACAATGGGTTCCCACTAACTACAGAACCTAATATCCTGCAAGAGATGATAGCTCCACCAAATATTGTTAGCAAAGTTTTGAGTGTTGTGACTGGCAACAGCTCCAATGTGAGCGACACACTTCCTGGTAGTACAGCATCCTGTGTTCCTTGGAGAACGGCCGATCCTAAGTATGCCAATAACGAAGTTTATGTAGACCTTGTCGAACAAATGGATGCAACAATAAACAGGGATGGTGTTCTAGTGAAATGTGAGATTAATGGCGAGGTTCAAGTAAACTCCCACATCACAGGTCAACCTGATTTAACTATTTCATTTGTGAATCCTTCAATCCTTGATGATGTGAGGTTCCATCCCTGTGTTAGATTTCGGCCTTGGGAATCCAATCAAATTCTATCATTTGTGCCTCCTGATGGACAATTTAAGCTAATGAATTACAGAGTTAGGAAATTGAAGAGCACCCCGATATATGTAAAGCCACAGTTGACTTCAGATGGTGGGACATGCCGTCTTAGTGTAATGGTTGGCATGAGAAACGATCCTGGAAAGACAGTTGACTCAGTTAACGTTCAGTTTCAGCTTCCTCCTTGCATCTTATCTGCTGATCTGACTTCAACTCATGGAACAGTAAACATTCTTTCTAACAAGACATGCACTTGGTCCATTGGTCGGATCCCAAAGGATAAATCCCCTTCAATGTCTGGAACACTAGTGCTCGAGACTGGAATGGAACGCCTTCACATCTTTCCTACATTTCAAGTGGATTTTAGGATTATGGGTGTCGCCCTCTCTGGTCTGCAAATAGACAAACTGGATCTGAAGACTGTACCTTACCGTTTCTACAAAGGCTTTCGAGCTCTTACCCGAGCAGGTGAATTTGAAGTCAGGTCATAG 1248 0.4287 MLQCIFLLSDSGEVILEKQLTGHRVDRSICNWFWDHAVSQPDSFKQQPVIASPTHYLFQVFREGITFLACTQVEMPPLMAIEFLCRVADVINDYLGGLNEDSIKDNFVIVYELLDEMIDNGFPLTTEPNILQEMIAPPNIVSKVLSVVTGNSSNVSDTLPGSTASCVPWRTADPKYANNEVYVDLVEQMDATINRDGVLVKCEINGEVQVNSHITGQPDLTISFVNPSILDDVRFHPCVRFRPWESNQILSFVPPDGQFKLMNYRVRKLKSTPIYVKPQLTSDGGTCRLSVMVGMRNDPGKTVDSVNVQFQLPPCILSADLTSTHGTVNILSNKTCTWSIGRIPKDKSPSMSGTLVLETGMERLHIFPTFQVDFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03685 415 PRINTS Clathrin coat assembly protein signature 230 257 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vifa5g03685 415 PRINTS Clathrin coat assembly protein signature 100 127 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vifa5g03685 415 PRINTS Clathrin coat assembly protein signature 337 348 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vifa5g03685 415 CDD AP-3_Mu3_Cterm 167 414 - -
Vifa5g03685 415 FunFam AP-2 complex subunit mu, putative 1 142 - -
Vifa5g03685 415 Gene3D - 1 142 - -
Vifa5g03685 415 CDD AP3_Mu_N 3 142 - -
Vifa5g03685 415 SUPERFAMILY SNARE-like 1 142 IPR011012 -
Vifa5g03685 415 Gene3D Mu homology domain, subdomain B 272 413 - -
Vifa5g03685 415 PANTHER AP COMPLEX SUBUNIT MU 1 414 - -
Vifa5g03685 415 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 167 187 IPR018240 GO:0006886|GO:0016192|GO:0030131
Vifa5g03685 415 Pfam Adaptor complexes medium subunit family 167 414 IPR028565 -
Vifa5g03685 415 ProSiteProfiles Mu homology domain (MHD) profile. 178 414 IPR028565 -
Vifa5g03685 415 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 167 414 IPR036168 -
Vifa5g03685 415 PIRSF AP_complex_mu 1 415 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vifa5g03685 415 Gene3D Mu homology domain, subdomain B 167 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03685 Vifa-Chr5 1185654005 1185657357 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03685 K12398 - gmx:100799191 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03685 5 1185654005 1185657357 Vifa5g03685 5 1185654005 1185657357 ECH