Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03659 ATGAGCACCACCACCGCCGACGGAACCGAAACCTCTAACCCTCCACCACCGACTTCCCTTGATCTATGGTCACAAATCGTCGCCGACGAAAACCAACCCCAGGGCAATCAAATTGACGTCGTTTTCCGCAGAAGAAAGCCTCGCAATGAATCAAATAATTCCAACTCATTACATTCCGATGAAGTTCCCCGGCGTCCGAGTCGGGTGAGTTTTGCTGACCCAAATAAGCGAATTAGTTGGAAACGCTCTCTTTCCACCAGAGGGAGAGTAAGTATAGCTGTTGGTGCTTCTATGGTTTATCAGCCTGAGCTAAAGAAGGATAAAAGAAAAGGCAAACCACCTGCTATTCCCAAAGGTAAGAATGTTAAATCTCCTAACTTTGACAAGGAAAGATTATACTTTCAAGAGGTTGATGCTTTTGAGTTGATGGAGGAGAGCCCCTCTCCGAAGAAAGTTGGTACATGGATTGTAGGCAATAATACGGAAGAGGTCCAATTACCATCACTATGCTCTAGATTGGAAAGATGGTTACACTCCAGAAGATTAAACCCCAGATGTCGTCCCTCAAGCACACTATCCAAAATCCTTGATACCCCAACAATGAATTTAGAAGTTAGATTGAGATCGTTGGATCAAAGTGGGCTAAGCAATTCACAATTGAGTAACTTCAAATCTGGAGAAAGTAAAAGAAGTTTAAACAATGTGAGTCTAATTGAGAGTGAAGGTTGTGAAGATATAGAAGCTGGTGTAAAGAAACTTTCTCTGACATCAACAACATCCTCAATATATGATGACCAAAATAATCCGTTTTCTGTTCTATTAGAAATTTGTGGGCAGTCCGCACCTTCCATGTTACAAGATTTGTTCTCTAGGTATAGTGGTTCTGAAACAGTTGTTAAAGTTGGCGAAGGAACATATGGAGAAGCTTTCAAGGTTGGGAATTGTGTATGCAAAATAGTTCCTTTTGATGGGGATCTTAGAGTGAATGGAGAAGTTCAAAAGAAATCAGAAGAATTGTTGGAGGAGGTGCTTCTTTCCAAAACTCTGAATCAATTGAGAGGAAGTGATGGTGTTTCTAGTAATAATCTATGCAGAACATTCATAGAATCCAAAGAATTTAGAGTATGTCAAGGTCTATATGACGAGGTTCTGGTTCGAGCATGGGAAGAGTGGGATCACAAGCATAATTCAGAGAATGATCACCCAAATGAGTTCCCAGAGCAACAGTGTTACATGGTCTTCGTGCAACAACACGGTGGCAAGGATCTTGAAGGTTTTGTGCTCCTTAATTTCGACGAAGCAAGGACTTTACTGGTTCAGGTTGCAGCTGGGCTTGCTGTGGCCGAGTCTGCCTTTGAATTCGAACATCGAGATCTTCACTGGGGAAATATACTTGTCAGCCGAAGTGATGATTCAGCAACGTTGCAGTTCACTCTCGATGGAAAAAACTTATTAGTCGAAACCTATGGATTGATAATATCTATTATTGACTTTACACTATCCAGAATGAACACTGGCGACAGTATACTGTACTTAGATCTTTCCGCCGATCCCGACCTATTTAAAGGGCCAAAAGGAGACAAACAGTCCGAAACATATCGGAAGATGAAGGAAGTGACTGAGGATTGGTGGGAAGGAAGTTCTCCTAAAACAAATGTGTTATGGTTGGTCTACTTGGTAGATATACTACTGACGAAGAAAACATTTGAACGTAGTTCAAAGGACGAGAGAGATCTACGGTCGTTGAAGAAACGTCTGGACAAGTATAATTCAGCCAAGGAAGCAGTTTTTGATCCTTTCTTCACTGAGTTGTTTGTTGAGTCAAATCCAATGGCTTAA 1839 0.4154 MSTTTADGTETSNPPPPTSLDLWSQIVADENQPQGNQIDVVFRRRKPRNESNNSNSLHSDEVPRRPSRVSFADPNKRISWKRSLSTRGRVSIAVGASMVYQPELKKDKRKGKPPAIPKGKNVKSPNFDKERLYFQEVDAFELMEESPSPKKVGTWIVGNNTEEVQLPSLCSRLERWLHSRRLNPRCRPSSTLSKILDTPTMNLEVRLRSLDQSGLSNSQLSNFKSGESKRSLNNVSLIESEGCEDIEAGVKKLSLTSTTSSIYDDQNNPFSVLLEICGQSAPSMLQDLFSRYSGSETVVKVGEGTYGEAFKVGNCVCKIVPFDGDLRVNGEVQKKSEELLEEVLLSKTLNQLRGSDGVSSNNLCRTFIESKEFRVCQGLYDEVLVRAWEEWDHKHNSENDHPNEFPEQQCYMVFVQQHGGKDLEGFVLLNFDEARTLLVQVAAGLAVAESAFEFEHRDLHWGNILVSRSDDSATLQFTLDGKNLLVETYGLIISIIDFTLSRMNTGDSILYLDLSADPDLFKGPKGDKQSETYRKMKEVTEDWWEGSSPKTNVLWLVYLVDILLTKKTFERSSKDERDLRSLKKRLDKYNSAKEAVFDPFFTELFVESNPMA 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03659 612 PANTHER INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 186 604 - -
Vifa5g03659 612 Gene3D Transferase(Phosphotransferase) domain 1 419 602 - -
Vifa5g03659 612 Pfam Haspin like kinase domain 264 595 - -
Vifa5g03659 612 SMART DUF3635_2 518 601 IPR024604 -
Vifa5g03659 612 MobiDBLite consensus disorder prediction 1 73 - -
Vifa5g03659 612 SUPERFAMILY Protein kinase-like (PK-like) 298 507 IPR011009 -
Vifa5g03659 612 FunFam Serine/threonine-protein kinase haspin-like protein 282 418 - -
Vifa5g03659 612 Gene3D Phosphorylase Kinase; domain 1 285 417 - -
Vifa5g03659 612 MobiDBLite consensus disorder prediction 103 124 - -
Vifa5g03659 612 FunFam serine/threonine-protein kinase haspin 419 603 - -
Vifa5g03659 612 SMART serkin_6 295 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03659 612 MobiDBLite consensus disorder prediction 1 38 - -
Vifa5g03659 612 ProSiteProfiles Protein kinase domain profile. 295 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03659 Vifa-Chr5 1179760162 1179764779 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03659 K16315 - gmx:100790036 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03659 5 1179760162 1179764779 Vifa5g03659 5 1179760162 1179764779 ECH