Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03650 ATGAAACTCATCGGAGCGTTGTTGCTTGTGGTGTTAGCCACCGCCTCCACCGCCACCGCAGCAGATGCCGATGCTCTTCAAGATCTATGTGTTGCAGACTATGCTTCTGCGATTTTAGTGAACGGATTCACATGCAAACCAGCATCGAAAGTAAGCGCAGAAGATTTCTTCTCAAACCTACTAGTCAACCAAGGTGCAACAAACAACACATTTGGTTCCTTAGTAACAGGAGCCAATGTTCAGAAAATCCCAGGACTAAACACTCTTGGTGTTTCAATGGCGAGAATCGACTACGCGCCCGGTGGACTCAACCCGCCTCACACGCACCCTCGTGCAACAGAAATGGTGTTTGTTCTTGAAGGTCAACTAGACGTTGGGTTCATAACAACAACGAATCAATTGATTGCAAAAACCATTGCTAAAGGTGAAACGTTTGTGTTTCCTAAAGGTTTGGTTCATTTTCAGAAGAACAATGGTTGGGAACCTGCTACTGTTATTGCTGGGTTTAATAGTCAATTGCCAGGGACTGTGAATATTCCTCTTACTTTGTTTAATGCTACACCACCTGTTCCAGATAATGTCTTGACTCAAGCTTTCCAAATTGGTACCAAAGAGGTTCACAAAATCAAGTCTAACTTTGCTCCTAAGTCCTAA 654 0.4388 MKLIGALLLVVLATASTATAADADALQDLCVADYASAILVNGFTCKPASKVSAEDFFSNLLVNQGATNNTFGSLVTGANVQKIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVGFITTTNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLFNATPPVPDNVLTQAFQIGTKEVHKIKSNFAPKS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03650 217 Pfam Cupin 63 206 IPR006045 -
Vifa5g03650 217 FunFam germin-like protein subfamily 2 member 1 21 215 - -
Vifa5g03650 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 211 - -
Vifa5g03650 217 SUPERFAMILY RmlC-like cupins 22 215 IPR011051 -
Vifa5g03650 217 Gene3D Jelly Rolls 21 216 IPR014710 -
Vifa5g03650 217 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Vifa5g03650 217 PRINTS Germin signature 137 157 IPR001929 GO:0030145
Vifa5g03650 217 PRINTS Germin signature 170 185 IPR001929 GO:0030145
Vifa5g03650 217 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Vifa5g03650 217 SMART Cupin_1_3 58 207 IPR006045 -
Vifa5g03650 217 CDD cupin_OxOx 30 213 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03650 Vifa-Chr5 1175965167 1175966049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03650 7 216 Miscellaneous Gene Families AT3G05930 53.555 7.80e-80 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03650 - - gmx:100791628 319.316