Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03645 ATGATTCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTATCTGACCGTTTTTGCATTCATTTTGGATTGGATGTACCCCTTTCTGTTAATGACCTTCTTGCATGTTGTGGATTTCTTTGTGGGTCTGGCTGTGATGGTGGGTATCCCATTGCTGCATGGCGATACTTAGCACACCATGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATCAAATTGGATGTTCTCATCCTGGTTGTGAGCCAGGATATCAAACTCCCAAGTGCGTTAGAAAGTGTGTGAAGGGAAACCAGCTTTGGAAGAAGTCAAAGCACTATAGTGTCAAAGCATATAAGGTCAGCTCTGATCCCCAAAATATCATGGAAGAAGTTTATAAGAACGGGCCGGTTGAAGTTGCATTCAGTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACATCACAGGATCTGCATTAGGCGGTCACGCAGTAAAGCTGATTGGGTGGGGAACAAGTAATGAAGGGGAGGACTATTGGCTTCTTGCAAATCAGTGGAATACAAATTGGGGAGATGATGGTTACTTCAAGATCAGGAGAGGGACAAATGAATGTGGGATTGAAGAGGAGGTTACAGCCGGTTTGCCTTCTCCCAAAAATGTTATTAGAGAAGTGACCGACACGGATGTTGACGCTGACGTTTCCTTCTGA 714 0.4398 MIQGHCGSCWAFGAVESLSDRFCIHFGLDVPLSVNDLLACCGFLCGSGCDGGYPIAAWRYLAHHGVVTEECDPYFDQIGCSHPGCEPGYQTPKCVRKCVKGNQLWKKSKHYSVKAYKVSSDPQNIMEEVYKNGPVEVAFSVYEDFAHYKSGVYKHITGSALGGHAVKLIGWGTSNEGEDYWLLANQWNTNWGDDGYFKIRRGTNECGIEEEVTAGLPSPKNVIREVTDTDVDADVSF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03645 237 CDD Peptidase_C1A_CathepsinB 3 215 - -
Vifa5g03645 237 Gene3D Cysteine proteinases 2 225 - -
Vifa5g03645 237 SMART pept_c1 1 216 IPR000668 GO:0006508|GO:0008234
Vifa5g03645 237 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 3 14 IPR000169 -
Vifa5g03645 237 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 162 172 IPR025660 -
Vifa5g03645 237 PRINTS Papain cysteine protease (C1) family signature 3 18 IPR000668 GO:0006508|GO:0008234
Vifa5g03645 237 PRINTS Papain cysteine protease (C1) family signature 164 174 IPR000668 GO:0006508|GO:0008234
Vifa5g03645 237 PRINTS Papain cysteine protease (C1) family signature 180 186 IPR000668 GO:0006508|GO:0008234
Vifa5g03645 237 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 3 209 IPR013128 GO:0008234
Vifa5g03645 237 Pfam Papain family cysteine protease 3 215 IPR000668 GO:0006508|GO:0008234
Vifa5g03645 237 SUPERFAMILY Cysteine proteinases 3 217 IPR038765 -
Vifa5g03645 237 FunFam cathepsin B-like protease 2 1 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03645 Vifa-Chr5 1174568161 1174569950 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03645 K01363 - gmx:100788988 457.988