Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03640 ATGATGATGACGAGTGAGTTACATGGAATTTCTATGTTGTTGAGTTCAAAGAAGCCATTCATCGACCGTGACAGGGTTCTGTCATCTTCGTTCTCTGGTAGCAAGTTTCATTCAAGGAATGATGCATTTGATTTTCCATATGGAAAATTCCTAAGTGTTGTACAAAGAAACACGACTAGAAGGTTTTTGGCTACTTCTACTCTTGCCGATGTTGCAAACAATTTTATGACCCCACAATCAACAATTTTTGCTGAAGAAGAAGCCAACCCAAAGACTGTTGCATCGATCATTTTAGGTGGTGGAGCTGGAACTCGGCTATTCCCCCTTACTCAGAAAAGGGCTAAACCTGCTGTGCCATTCGGAGGTTGTTATAGGCTGGTGGACATACCAATGAGTAATTGTATTAATAGTGGAATTAACAAAATTTACGTCCTTACACAGTTCAATTCTCAGTCCCTCAACCGCCACATTGCTCGAACGTATCATTTGGGAGGTGGTGTCAACTGCGGTGGTAGTTTTATTGAGGTATTGGCAGCAACACAAACACTCGGTGAAGCAGGAAATAAGTGGTTTCAGGGTACTGCAGATGCTGTAAGACGATTCCTTTGGTTGTTTGAGGATGCTGAGCATAAAAGCATAGAGAACATTCTGATACTGTGTGGTGATCAGCTCTATCGAATGGATTACATGGAACTTGTGAAGAAGCACATTAATTCATATGCTGATATATCGGTATCGTGTCTACCAGTAAATGGCAGTCGTGCCTCTGATTTTGGACTAGTGAAGGTTGACGAAAGAGGACAGATACGCCAATTCATGGAAAAACCCAAGGGAGAATTATTAAGATCTATGCATGTAGATACGAGTATTTTTGGGTTATCAGCACAAGAAGCAAAGAAGCTTCCGTATATCGCATCAATGGGTATATACGTGTTTAAATTAGACGTTCTTCGCAAACTTCTCAGGAACTGTTATCCTAATGCAAATGATTTTGGATCCGAGGTTCTTCCGAAGGCTATAAAAGATTTTAAAGTTCAGGCATGTCTTTTCAGTGGTTATTGGGAAGATATTGGGACTATAAAATCTTTCTATGATGCAAACTTGGCGCTTATGGACAAGCCGCCAAAGTTTCAGTTATATGATCAGTCAAAGCCTATTTTTACGTGTCCTCGGTTCCTACCCCCGACTAAAATGGAGAAGTGTCAGGTGATTAATTCTTTGATTTCAGATGGTGGTTTTTTAAGAGAGTGCACGGTTGAGCATTCCATAGTTGGAATTCGTTCGAGACTCGATCATGGAGTGCTGCTAAAGGATACCTTGATGATGGGCGCTGACTATTATCAAACCGAGGCTGAAATTGCGTCTCTATTAGCAGCTGGGGACGTTCCTATAGGCATAGGCAAGAATACGAAAATTTTGAACTGTATAATCGACAAAAACGCAAGAATTGGAAACAATGTAATAATTGCAAACAAAGAAAATGTGCAGGAGGCTGACAGATCGTCTGAGGGATTTTATATTCGATCAGGGATCACGGTGGTGTTGAAAAACTCGGTAATAAACAACGGCACTATTATTTAA 1581 0.4067 MMMTSELHGISMLLSSKKPFIDRDRVLSSSFSGSKFHSRNDAFDFPYGKFLSVVQRNTTRRFLATSTLADVANNFMTPQSTIFAEEEANPKTVASIILGGGAGTRLFPLTQKRAKPAVPFGGCYRLVDIPMSNCINSGINKIYVLTQFNSQSLNRHIARTYHLGGGVNCGGSFIEVLAATQTLGEAGNKWFQGTADAVRRFLWLFEDAEHKSIENILILCGDQLYRMDYMELVKKHINSYADISVSCLPVNGSRASDFGLVKVDERGQIRQFMEKPKGELLRSMHVDTSIFGLSAQEAKKLPYIASMGIYVFKLDVLRKLLRNCYPNANDFGSEVLPKAIKDFKVQACLFSGYWEDIGTIKSFYDANLALMDKPPKFQLYDQSKPIFTCPRFLPPTKMEKCQVINSLISDGGFLRECTVEHSIVGIRSRLDHGVLLKDTLMMGADYYQTEAEIASLLAAGDVPIGIGKNTKILNCIIDKNARIGNNVIIANKENVQEADRSSEGFYIRSGITVVLKNSVINNGTII 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03640 526 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 99 118 IPR005836 GO:0005978|GO:0008878
Vifa5g03640 526 CDD LbH_G1P_AT_C 394 520 - -
Vifa5g03640 526 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 77 391 IPR029044 -
Vifa5g03640 526 FunFam Glucose-1-phosphate adenylyltransferase 392 526 - -
Vifa5g03640 526 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 190 198 IPR005836 GO:0005978|GO:0008878
Vifa5g03640 526 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 305 315 IPR005836 GO:0005978|GO:0008878
Vifa5g03640 526 Pfam Nucleotidyl transferase 95 371 IPR005835 GO:0009058
Vifa5g03640 526 SUPERFAMILY Trimeric LpxA-like enzymes 390 526 IPR011004 -
Vifa5g03640 526 SUPERFAMILY Nucleotide-diphospho-sugar transferases 93 487 IPR029044 -
Vifa5g03640 526 Gene3D Hexapeptide repeat proteins 392 526 - -
Vifa5g03640 526 CDD ADP_Glucose_PP 96 357 - -
Vifa5g03640 526 NCBIfam glucose-1-phosphate adenylyltransferase 94 490 IPR011831 GO:0005978|GO:0008878
Vifa5g03640 526 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 65 526 IPR011831 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03640 Vifa-Chr5 1173830704 1173834027 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03640 K00975 - gmx:100805739 889.412