Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03627 ATGTCATTTTCTTTTCTCTCCCTCTTATTATTTTGTTCTACTCTCTTTCTAAGAGTTGAATCACGGTACTCTCCAATTACACCAATCACATCTCTAATAAGTAAAAATCTTTTTGATTCAATTTTCCTACACAAAGATGACACTGCATGTCCTGCAAAAAACTTCTACCCTTACCAATCCTTCATCGAAGCTTCCAAGTCTTTTCCACCATTTGGTACTACAGGTTGTTTGGCCACAAGAAAACGTGAGATAGCTGCTTTTCTTGCTCAGATTTCTCATGAAACTAGTGGCGGATGGTCCACTGCACCTGATGGTCCATTCTCTTGGGGATTATGCTTCAAAGAAGAAATTAGTCCTCAGAGTATTTACTGTGATTCTACTGATAAAGATTGGCCTTGTTTTGAAGGCAAAAGCTATAAAGGAAGAGGTCCAATTCAACTCTCTTGGAATTTCAACTATGGACCAGCAGGGAAGGCATTGGGATTTGATGGGCTAAGGAATCCAGAAATTGTATCAAACAATTCTGTGATTGCTTTCAAAACTGCTATATGGTTTTGGATGACAGAAAGAAAACCGACACCTTCATGTCACAATGTGATGGTTGGAAAATATGTAGCAACAGAAGCTGACATAGCTGCTAATAGAACAGCTGGTTATGGTTTGGTCACAAACATAATCAATGGAGGATTGGAATGTGGAATTCCTGGTGATGCAAGAGTCAATGATCGAATTGGGTTTTTTCAAAGATATTCTAAGTTGTTTAATGTTGATACTGGACCTAACTTGGATTGTGCATATCAGAAATCCTTATAA 813 0.3801 MSFSFLSLLLFCSTLFLRVESRYSPITPITSLISKNLFDSIFLHKDDTACPAKNFYPYQSFIEASKSFPPFGTTGCLATRKREIAAFLAQISHETSGGWSTAPDGPFSWGLCFKEEISPQSIYCDSTDKDWPCFEGKSYKGRGPIQLSWNFNYGPAGKALGFDGLRNPEIVSNNSVIAFKTAIWFWMTERKPTPSCHNVMVGKYVATEADIAANRTAGYGLVTNIINGGLECGIPGDARVNDRIGFFQRYSKLFNVDTGPNLDCAYQKSL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03627 270 FunFam Endochitinase (Chitinase) 115 173 - -
Vifa5g03627 270 PIRSF Endochitinase 11 270 IPR016283 GO:0004568|GO:0005975
Vifa5g03627 270 Gene3D Endochitinase, domain 2 115 173 - -
Vifa5g03627 270 Gene3D - 36 269 - -
Vifa5g03627 270 ProSitePatterns Chitinases family 19 signature 2. 177 187 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vifa5g03627 270 CDD chitinase_GH19 33 264 - -
Vifa5g03627 270 SUPERFAMILY Lysozyme-like 29 269 IPR023346 -
Vifa5g03627 270 PANTHER CHITINASE-RELATED 27 268 - -
Vifa5g03627 270 Pfam Chitinase class I 32 264 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03627 Vifa-Chr5 1170614875 1170615955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03627 18 268 Glycoside Hydrolase AT4G01700 71.713 2.82e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03627 - - gmx:100784196 469.544