Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03624 ATGAGGAGACTTTCATCTGTAACTGTTGTGGATGTGTTTTTGGTACTTGCATTGTTGTGTTGTAGCTCATGGAAAGTGTGGAGCATCACACTTTGCAAGGAGACAAATTTGGAGAAAGTTAGGCCTCATAGTGTCAGTATTACTGAATTCGGTGCTGTTGGAGATGGGATCACTCTCAACACGAAAGCGTTTCAGAATGCGATTTTCTACCTAAATTCTTTCTCAGACAAAGGTGGAGCTAAGCTTTTTGTTCCAGCTGGTCGGTGGTTAACCGGTAGTTTTGATCTCATTAGCCACCTAACTTTGTGGTTGGATAAGGATGCGATAATTCTTGGATCAACGAACTCTGAGGATTGGCCGATTGTTGATCCTCTACCGTCTTATGGACGAGGAAGGGAGTTGCCGGGTGCAAGGCATAGGAGTCTCATCTATGGAAGCAATTTGACTGATGTTATCATAACAGGTAATGAGGGGATTATCGATGGTCAAGGGAGTATCTGGTGGAGCAAGTTTAGGAACAAAACTCTGGATTATACGCGTCCTCATTTGGTAGAATTGATGAGTTCGGCCGGGATTCTCATTTCAAATTTAACCTTCTTGAATTCTCCGTTTTGGACTATTCATCCTGTATATTGCAGCCAAGTTACGGTTCAGAACGTGACGATTCTTGCGCCTCTTGATTCACCAAACACCGATGGGATTGATCCAGACTCTTCCGATGATGTATGCATCGAAGACTGTTATATAAGTACTGGCGATGATCTGATTGCCATCAAAAGTGGGTGGGATGAGTATGGAATTGCATTTGGCCGTCCCAGCACAAATATTATCATCCACAGACTAGTCGGGAAAACTCAAGTAAGCGCAGGAATTGCTATCGGAAGTGAGATGTCGGGCGGTGTATCAAACATTCATGCTCAAGATATTCTCTTTTACGATTCATATACAGCCATCAGAATAAAGACTTCACCTGGCCGAGGGGGTTATGTTAGAAACATCTATGTCTCTAACATGACATTGACAAATGTTGATATCGCAATTAGGTTCACTGGTTTATATGGCGACCATCCAGACGATGGTTATGACCAAAACGCTCTACCGGTAATCGAAAAGATTACAATCGAGGACGTGAAAGGAGACAATATTAAAAAAGCGGGTCTTATAGAAGGTATAGAAGGTGACAATTTCGTCGATATTTGCTTATCAAACATCATCCTCAATGTGAGCTCAAACTATCCATGGAACTGCTCTAACATTAGAGGTTACTCTGACACGGTTTCACCTGAAGCTTGTGAGCCACTCAAGGAAAGAATATTCCCCGATCATTGTTCAGACTGTTACCATTTGTCGAATCACCAACAAAGTTCAAACGATAAAAAAAGAGGTGGTTCGTTTACGTCTTGGTAA 1407 0.4222 MRRLSSVTVVDVFLVLALLCCSSWKVWSITLCKETNLEKVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFSDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAIILGSTNSEDWPIVDPLPSYGRGRELPGARHRSLIYGSNLTDVIITGNEGIIDGQGSIWWSKFRNKTLDYTRPHLVELMSSAGILISNLTFLNSPFWTIHPVYCSQVTVQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIIHRLVGKTQVSAGIAIGSEMSGGVSNIHAQDILFYDSYTAIRIKTSPGRGGYVRNIYVSNMTLTNVDIAIRFTGLYGDHPDDGYDQNALPVIEKITIEDVKGDNIKKAGLIEGIEGDNFVDICLSNIILNVSSNYPWNCSNIRGYSDTVSPEACEPLKERIFPDHCSDCYHLSNHQQSSNDKKRGGSFTSW 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03624 468 PANTHER PECTIN LYASE-RELATED 22 444 - -
Vifa5g03624 468 SMART pbh1 273 295 IPR006626 -
Vifa5g03624 468 SMART pbh1 239 271 IPR006626 -
Vifa5g03624 468 SMART pbh1 212 238 IPR006626 -
Vifa5g03624 468 SMART pbh1 330 351 IPR006626 -
Vifa5g03624 468 SMART pbh1 301 322 IPR006626 -
Vifa5g03624 468 Pfam Glycosyl hydrolases family 28 140 420 IPR000743 GO:0004650|GO:0005975
Vifa5g03624 468 SUPERFAMILY Pectin lyase-like 37 434 IPR011050 -
Vifa5g03624 468 Gene3D - 25 427 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03624 Vifa-Chr5 1169072830 1169075085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03624 32 468 Glycoside Hydrolase AT3G62110 69.977 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03624 - - gmx:100782602 805.823