Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03599 ATGACAATTCATGGTAGATTTTTCAATTTCCGTCGTCTTCTTGGGTTCCGAAACCAATTCCAATCAAATTCCGAACTCACACTTCCAAATTTCCGCCTCCGTCCTTACTCTTCCGAAGTGCAACCTGAAATTTCGCCGGATCTGTTAAACATAATGGAACAAAGATTCTCAGCTATTAAGTATAGGGCTAATTGTCTTGATAATCTCATAAATCAGCCAGAAGTGTCACCATCAGAGTATGCAAGAGCTAATAAGGAGCTTCGAAAGCTGAGTGGTTCGGTGGAACTTATTAATCAATTGAAGGCTAAACAGAAGGAAATCGATGGCTTGAAGTCACTAATAACTGAATGTTCTGATGACAAAGACATGCTTAATATGGCAACAGAGGAAATGAACCAAGCCATAGAGGAAGAAAAAAAACTGCAGAATATGCTGCTTAAGTCATTACTTCCGAAGGATGATGCTGATGAAAGAGATTGCATTTTGGAGGTACGAGCAGGGAGTGGTGGGGAGGAGGCTTCCTTGTTTGCAATGAACATCCTTAAGATGTACGAGAAGTATGCACACAACAAAGGCTGGAAGTTTGAAGTGGTAGATATAGCTCAATCTGATATGAAGGGATTCAAGGAGGCTAGTGCAGCAATTGTAGGAGTTGGTGTATTTGGGAAACTAAAATTTGAGAGTGGAATTCATAGAGTACAGCGAGTTCCTGTCACCGAAAAATTGGGACGGGTTCATACCAGTGCTGTCTCTGTTGCAATTCTCCCTCAGGCTGATGAGGTCGATGTTCAGTTAAAAAATGAAGACTTAAAAATTGATACCTATAGATCTGGTGGTTCAGGTGGTCAGCATGCAAATGCAACTAGCAGTGCTGTTAGAATAACTCACCTTCCATCTGGGATTGTGGTTGCTATACAAGATGAGCGTTCTCAGCATATGAATAAGGCCAAAGCTCTCAAGGTACTGTGTGCAAAGCTATATGAAATGGAAAGGATCAGACTTCATAGTAGTCGATCAAAGCTCCGATCAGAGCAGATCGGTAGTGGGGACAGATCTGAACGTATCCGAACATACAATTTTCCTCAAGGCCGCGTAACTGATCATAGAGTTGGTATTACTTATCACAACATAGAAGATGTGATGCTAGGAGAGAGTCTTGATGTCTTCATTGATGCTCTCCTTCTGAAAGAAGAAATGGATGCAATTGCAACTTTTAGTTCTTCTACCTAA 1230 0.4122 MTIHGRFFNFRRLLGFRNQFQSNSELTLPNFRLRPYSSEVQPEISPDLLNIMEQRFSAIKYRANCLDNLINQPEVSPSEYARANKELRKLSGSVELINQLKAKQKEIDGLKSLITECSDDKDMLNMATEEMNQAIEEEKKLQNMLLKSLLPKDDADERDCILEVRAGSGGEEASLFAMNILKMYEKYAHNKGWKFEVVDIAQSDMKGFKEASAAIVGVGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADEVDVQLKNEDLKIDTYRSGGSGGQHANATSSAVRITHLPSGIVVAIQDERSQHMNKAKALKVLCAKLYEMERIRLHSSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHNIEDVMLGESLDVFIDALLLKEEMDAIATFSSST 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03599 409 Gene3D - 47 154 - -
Vifa5g03599 409 PANTHER LD18447P 51 404 - -
Vifa5g03599 409 SUPERFAMILY Release factor 72 396 IPR045853 -
Vifa5g03599 409 NCBIfam peptide chain release factor 1 54 406 IPR004373 GO:0006415|GO:0016149
Vifa5g03599 409 Coils Coil 124 144 - -
Vifa5g03599 409 FunFam Peptide chain release factor 1 258 353 - -
Vifa5g03599 409 Pfam RF-1 domain 259 369 IPR000352 GO:0003747|GO:0006415
Vifa5g03599 409 Gene3D - 258 353 - -
Vifa5g03599 409 Gene3D - 162 390 - -
Vifa5g03599 409 FunFam Peptide chain release factor 1 156 266 - -
Vifa5g03599 409 SMART PCRF_a_2 112 227 IPR005139 GO:0006415
Vifa5g03599 409 Pfam PCRF domain 61 252 IPR005139 GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03599 Vifa-Chr5 1168735520 1168738641 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03599 K02835 - gmx:100800412 655.981