Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03585 ATGATGAAGAAACGGTTGGAGGGTAAGGTTGCATTAATAACAGGTGCAGCGAGTGGAATTGGCGAAGAGACGGTGAAATTATTCGTGGAAAATGGAGCATATGTTATTGCAGCAGATATTCAAGATGAATTAGGTCAACAAGTTGCAGATTCAATAGGTTCAGAGAAAGTAACATATCATCATTGTGATGTGAGAGACGAAAAACAGGTTGAAGAAACGGTTAACTTCGCGTTGGAAAGACACGGTCGCGTTGATGTTTTGTTTAGTAATGCAGGAATAATAGGATCTTTATCGGGAATACTGGAGCTGGATCTGGACGAGTTTGAGAAAACTATGGCTACAAATGTTGTTGGAACAGCTGCTATGATGAAGCATTCGGCGCGTGCCATGGTTGAGAAGAAGATTCGCGGGTCGATTATATGTACTACTAGTGTTTCTGCTTCTGTTGGTGGAACAGGTCCTAATGGTTACACTACATCAAAACATGCTGTTTTAGGACTTGTGAAATCGGCTTGTAGTGAACTTGGCGGTTATGGAATTAGGGTTAATAGTATTTCTCCTTATGGAGTTGCGACGCCTCTTTCGTGTCGAGCTTACAATCTTGAACCACATGAAGTTGAAGCTAGTACATACTCTAATGCTAATTTGAAGGGTGTTGTTTTGAAGGCTAAGCATATTGCTGAAGCAGCTTTGTTTCTTGCTTCTGATGAAGCTGTTTATATCAGTGGCCATAACTTGGTTGTTGATGGTGGCATATCGGTCATTCGTAATACTACGTCAGAGCATGTTTGA 792 0.4116 MMKKRLEGKVALITGAASGIGEETVKLFVENGAYVIAADIQDELGQQVADSIGSEKVTYHHCDVRDEKQVEETVNFALERHGRVDVLFSNAGIIGSLSGILELDLDEFEKTMATNVVGTAAMMKHSARAMVEKKIRGSIICTTSVSASVGGTGPNGYTTSKHAVLGLVKSACSELGGYGIRVNSISPYGVATPLSCRAYNLEPHEVEASTYSNANLKGVVLKAKHIAEAALFLASDEAVYISGHNLVVDGGISVIRNTTSEHV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03585 263 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Vifa5g03585 263 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Vifa5g03585 263 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Vifa5g03585 263 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Vifa5g03585 263 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Vifa5g03585 263 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Vifa5g03585 263 FunFam Short-chain dehydrogenase reductase 1 257 - -
Vifa5g03585 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Vifa5g03585 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Vifa5g03585 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Vifa5g03585 263 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2 257 - -
Vifa5g03585 263 Gene3D - 1 259 - -
Vifa5g03585 263 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 254 IPR036291 -
Vifa5g03585 263 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03585 Vifa-Chr5 1165641469 1165642351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03585 6 251 Acyl Lipid Metabolism Gene Families AT3G55290 30.303 3.45e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03585 - - gmx:100811279 409.838