Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03579 ATGAAGCATTCTCATATTTTACCATTGTGTTTATTTTTCCTTACTTTATTTCTTTTAGTTCAAGGTAGACATCATTCACATAGGAAACATAAGCATTCACATTCTCATAAATCAAATAAAACTTTTCTTCCACAACCTCCACCTTCTCCTCCTCCTTCTCCTCGTGGCAATGATGATGGCTACTACAATAATAGTGCTTATGGAATTTTTGATGTAAGATCATTTGGTGCTGTTGGAGATGGAATAGAAGATGATACAGACGCGTTTAAGACGGCATGGGACACTGCATGTCAAAATGTGTCACAGGTTAATGTTATTCTTGTTCCTCGAGGCTTCTCCTTCGTCGTTCAGTCTACTATCTTCACCGGTCCTTGTCAAGGTTACCTAGTATTCAAGGTGGATGGCACCGTTATGCCACCCGATGGACCCGATTCTTGGCCGAAGAACACCGGTAAGCGACAATGGCTGGTTTTTTACAGGATCAATGGAATGTCATTAGAAGGAAGTGGTTTAATAGATGGAAGAGGACAGAAATGGTGGGACCTTCCTTGTAAGCCTCACAAGGGATCAAATGTAACAGCATTAGGACCTTGTGACAGTCCAATCGCTATAAGATTTTTTATGAGTTCCAACTTGACAGTGCAAGGACTAAAGGTGAAGAACAGTCCTCAGTTCCATTTCAGATTTGATGGCTGCAATAATGTCCATATAGATTCAATTTACATTACAGCTCCAAAACTAAGTCCTAACACTGATGGAATTCACTTAGAAAATGTCAATGATGTGAAAATATATAATTCTGTGATTTCCAATGGTGATGACTGTGTCTCCATTGGTTCTGGATCCTATGATGTTGATATAAAGAACATTACATGTGGACCTAGTCATGGAATTAGCATAGGTAGTCTAGGAAACCACAACTCCAAAGCATGTGTATCAAACATAACAGTGAGAGACTCAATCATAAAAATGTCAGACAATGGAGTTAGAATCAAGACATGGCAAGGTGGATCAGGAACAGTATCAGGAGTAACATTCAACAACATTAACATGATTAGTGTAAGAAATCCAATAATAATTGACCAATTTTATTGCCTAACCAAAGATTGCACCAACAAAACCTCAGCAGTATTTATTTCCAACATTCTTTACACAAACATCAAAGGAACATATGATATAAAAAGTCCTCCTATGCATTTTGGTTGTAGTGATTCTGTCCCTTGCTCCAACATAACTCTCTCAGAGATTGAGCTTCTTCCATCTCAAGGAGATATAGTTAATGATCCTTTTTGTTGGAATGCTTATGGAGATTTGGAGACATTAACTATTCCACCAGTTTCTTGTTTGTTAGAGGGAACTCCTCAATCTTTGTTGGACTATGATGCTGGTCATTGTTGA 1398 0.382 MKHSHILPLCLFFLTLFLLVQGRHHSHRKHKHSHSHKSNKTFLPQPPPSPPPSPRGNDDGYYNNSAYGIFDVRSFGAVGDGIEDDTDAFKTAWDTACQNVSQVNVILVPRGFSFVVQSTIFTGPCQGYLVFKVDGTVMPPDGPDSWPKNTGKRQWLVFYRINGMSLEGSGLIDGRGQKWWDLPCKPHKGSNVTALGPCDSPIAIRFFMSSNLTVQGLKVKNSPQFHFRFDGCNNVHIDSIYITAPKLSPNTDGIHLENVNDVKIYNSVISNGDDCVSIGSGSYDVDIKNITCGPSHGISIGSLGNHNSKACVSNITVRDSIIKMSDNGVRIKTWQGGSGTVSGVTFNNINMISVRNPIIIDQFYCLTKDCTNKTSAVFISNILYTNIKGTYDIKSPPMHFGCSDSVPCSNITLSEIELLPSQGDIVNDPFCWNAYGDLETLTIPPVSCLLEGTPQSLLDYDAGHC 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03579 465 ProSitePatterns Polygalacturonase active site. 289 302 IPR000743 GO:0004650|GO:0005975
Vifa5g03579 465 FunFam Polygalacturonase At1g48100 family 58 452 - -
Vifa5g03579 465 SMART pbh1 282 302 IPR006626 -
Vifa5g03579 465 SMART pbh1 232 258 IPR006626 -
Vifa5g03579 465 SMART pbh1 341 362 IPR006626 -
Vifa5g03579 465 SMART pbh1 259 280 IPR006626 -
Vifa5g03579 465 SMART pbh1 312 333 IPR006626 -
Vifa5g03579 465 Pfam Glycosyl hydrolases family 28 97 419 IPR000743 GO:0004650|GO:0005975
Vifa5g03579 465 Gene3D - 56 450 IPR012334 -
Vifa5g03579 465 PANTHER - 69 436 - -
Vifa5g03579 465 SUPERFAMILY Pectin lyase-like 68 455 IPR011050 -
Vifa5g03579 465 MobiDBLite consensus disorder prediction 28 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03579 Vifa-Chr5 1164077855 1164079960 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03579 68 457 Glycoside Hydrolase AT1G02460 73.858 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03579 - - gmx:100778836 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03579 5 1164077855 1164079960 Vifa5g03579 5 1164077855 1164079960 ECH