Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03561 ATGGCCAATATCCCCGATCCAGACATCGACGACGATTTTCGTGATCTTTACAAAGAGTACACTGGTCCTCTAGGATCTGGATCTGCTCAAGAGAAAGCAAAATCAAACAAAAGGTCCAATGCTGGTTCTGACGAAGACGATGAAGTTCGTGACCCTAACGCTATCCCAACTGGTTTCATTAGCCGTGATGCTAAGGTTTGGGAAGCAAAATCCAAAGCCACTGAGAGAAATTGGAAGAAAAGGAAAGAAGAAGAAATGATTTGCAAACTCTGTGGTGAATCGGGGCATTTCACTCAGGGTTGTCCATCTACTCTTGGAGCAAACCATAAGTCTCAAGAATTATTTCAAAGGATACCTGCAAGAGACAAAAATGTAAGAGCACTTTTCACTGAGAAAGTTATAACTAAGATTGAAAGGGATATTGGCTGCAAAATCAAGATGGACGAGAAATTCATTATTGTTAGTAGTAAGGATAGGTTGGTTATGGCTAAAGGAGTTGATGCTGTGCATAAGATAAGAGAGGAAGGTGAACAAAAAGGATCTTCCAGTTCTCACATGAACCGATCAAGGTCACCGCCACCTCAACGATCAAGGTCACCACCACCTCAGAGAAGTCCTGTCAATGCTCGGTTTCAGCGTTCTGAGCCTCAGAGATCTCATTCTACACCACGGACTGCACCCCAGTTTCAGCCAAGGTTTGGCAGGCAAGAGAGGGCTGTTGAGGACCGTGTTCGAGAGGACAGTCAAAAGTTTTCAAGAGATTCTCCACAAGCAAGAGCTTATGGGAATAATGGACCTAGAGGTCGTTCAAGCCAGTCAAGATCTCCAAGACAAGCAGCCCCACATGCAGGAAACTCTTATAATTCATTTGATGGGCGAAATCATAACATGAGCACGTTCAGGAACGATGGTTGGGATTCTCATAGGAGAGAGTCTGGTATCCAACCTGGTCAACAGTTTGATCACAATGCTTCACCTAAGACTCTTGAAGAATTAGAGTTGGAGTATAAAAAGGAGGCAGTGGAGCTAATGAAAATCCGTGATAGAGAAGAAGATGAAGAAAACTTCAAACACCGTGAGGCTATTAAAGATTTGAGGGAGAAGTACATGAACAAAGTAGCTTTGGTGAGTGCCACACACACAAAACAATGGGATGAGTTTTTTAAGCTTGATGCCCAGAGGCGTCAACAACAGGCAATCCAACAAATGTCTCCTGGGTATCGTGGTTATAAGCCGCAGAATTTTGCTGATTATGATAGGTCCCCTGTCAATCCTCCCTATGGTGGAGCCTTACCTTTGGAATCAAGGAACAGGTTCTCAAACAGTACGGAGTCTTATCCTTCAAGGCCTCATGGTAATTTTGGGGAATTTCATAGACGTGGAGATTTTCCAAAAGCTTACAACCGATATTAA 1413 0.4345 MANIPDPDIDDDFRDLYKEYTGPLGSGSAQEKAKSNKRSNAGSDEDDEVRDPNAIPTGFISRDAKVWEAKSKATERNWKKRKEEEMICKLCGESGHFTQGCPSTLGANHKSQELFQRIPARDKNVRALFTEKVITKIERDIGCKIKMDEKFIIVSSKDRLVMAKGVDAVHKIREEGEQKGSSSSHMNRSRSPPPQRSRSPPPQRSPVNARFQRSEPQRSHSTPRTAPQFQPRFGRQERAVEDRVREDSQKFSRDSPQARAYGNNGPRGRSSQSRSPRQAAPHAGNSYNSFDGRNHNMSTFRNDGWDSHRRESGIQPGQQFDHNASPKTLEELELEYKKEAVELMKIRDREEDEENFKHREAIKDLREKYMNKVALVSATHTKQWDEFFKLDAQRRQQQAIQQMSPGYRGYKPQNFADYDRSPVNPPYGGALPLESRNRFSNSTESYPSRPHGNFGEFHRRGDFPKAYNRY 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03561 470 MobiDBLite consensus disorder prediction 235 253 - -
Vifa5g03561 470 MobiDBLite consensus disorder prediction 37 52 - -
Vifa5g03561 470 MobiDBLite consensus disorder prediction 254 301 - -
Vifa5g03561 470 PANTHER OS01G0252900 PROTEIN 1 470 - -
Vifa5g03561 470 SUPERFAMILY Retrovirus zinc finger-like domains 75 107 IPR036875 GO:0003676|GO:0008270
Vifa5g03561 470 Coils Coil 329 349 - -
Vifa5g03561 470 ProSiteProfiles Zinc finger CCHC-type profile. 88 103 IPR001878 GO:0003676|GO:0008270
Vifa5g03561 470 MobiDBLite consensus disorder prediction 202 229 - -
Vifa5g03561 470 MobiDBLite consensus disorder prediction 1 57 - -
Vifa5g03561 470 MobiDBLite consensus disorder prediction 438 458 - -
Vifa5g03561 470 MobiDBLite consensus disorder prediction 174 326 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03561 - - gmx:100806099 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03561 5 1160205202 1160208424 Vifa5g03561 5 1160205202 1160208424 ECH