Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03556 ATGTCGATCGGCGACGCTTTTCTCCTCTTACTCTTCGTTGCTACTTACTCCATTTCAGCCGCTTCCGCTGATTCCATCTATGGCTGCGGCGGATTCGTCCAGGCAAGCTCATCGTTGGTGAAATCGAGGAAACAAACTGATGCAAAATTGGATTATTCACATGTCACGGTTGAGCTTCAAACAGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGGGTTCCTTTGTTATTAAAGTTAATGGACCTGATGGGTGGTCATGGGATCCTGAAAAGGTTCCCGTGGCAGTTGATAATCAAGGTTGCAATGGGAATGAAGATATAAATTTTCGTTTCACAGGGTTCTCTATATCTGGTAGAGTCGTGGGAGCTGGTGGAGAAAGCTGTTCGGTTAAAAATGGAGGTCCTTCAAATGTAAAAGTTGAACTATTGTCTCCTTCTGGAGATCTTGTTTCATCCGTCTTGACTTCACCATCAGGGAGCTACTTGTTTACAAACGTGATTCCAGGAAAATATGAGCTACAAGCTTCAAATCCTGATATTAAAGTTGAAGTCAAAGTTCCAAATTCATTTAATGAGCTTGCATTTTGCGCTTCCATTTTGTCGATATGTTCTTTTTGCAGGTGGAATTGGGCTTTGGAAATGGGGGTGATTGATGATATTTTCTTTGTCCCTGGGTATAGTATCAGCGGGTCTGTTGTTGCACAGGGAAACCCAATATTAGGAGTCCATATCTTCTTATATTCAGAGGATGTATCTGAGATAAAATGTTTGCAAGGTTCTGCTCATGGTCCACGACAAGAAGCAGCTCTATGTCATGCTGTAACAGATGCAGACGGAAAGTTCTCATTCAATTCAGTACCTTGTGGAAGTTATGAACTAGTTCCCTACTACAAGGGTGAAAATACAGTATTTGATGTTTCACCATCTAGTGTTCCAGTTAATGTTAGGCATCAACATGTAACAATCCCTCACAAATTTCAGGTAACTGGATTTTCTGTTGGAGGCCGTGTAGTTGACGGAAATGACATGGGAGTGGAGGGTGTTAAGGTCATAGTTGATGGTCATGAAAGGTCTATTACTGACAATCAAGGATATTACAAGCTTGACCAGGTTACATCCACACACTATACCATAGAAGCCCGAAAGGAGCATTACAAATTCAAGAAGTTGGAGAATTATATGGTATTGCCAAATATGGCTTCAATAGAAGACATTGTCGCCGTTTCATATGATATTTGTGGTTTGGTTAGGATGGTTAGTAGCAGTCAGAAAGCAACGGTGGCTTTGACTCACGGACCTGATAATGTGAAACCACAAAAGAAACAAACTGATGGAAATGGAAATTTCTGCTTTGAGGTTATTCCTGGTGAATATCGCTTGTCAGCTATTGCTGCTTCTCCTGATAATGCTGCCGGACTCATGTTTGCTCCATCTTATATCGATGTTGCGATCAAAAGTCCATTATTGAATGTTGAATTTTCACAGGCTCTGGTCAATGTCCGTGGTGCCCGGAGAAAGACAATTAGCTTGACCTCCGAGAGTAGTGAATTTCTGTTTTCTGATGTTGTTCCTGGAAAATACAGGCTTGAGGTGAAACATAGTTCCTCTGAATCAGTGACCAAGGAAGATAATTGGTGCTGGGAGAAGAGCTTCATAGATGTAAATATTGGAGCTGAGGACTTGGAAGGAATTGTTTTTGTTCAAAAAGGCTACTGGGTCAATGTGATCTCAACTCATGAAGTTAACGGTTACATAACTCAACCTGATGGGTCAACTGTGAATTTGAAGATTAAGAAAGGTTCCCAGCATATATGTGTTGAATTTCCCGGAATACATGAGTTTAGTTTTATTGACTCATGCATCTTCTTTGGGAGCTCACCTGTGAAAATTGACACATCGAGTCTATTGCCCATTCATCTAAAAGGAGAAAAGCATCTTATTAAAGGACAAATAAATGTGCATTCCAGCTTACATGATGAACTGCCTGAGAAAATAGTGGTTGATATTTATCGTGATGGAGCCGACGTTGCTGATAATGCGATGGCCATACTCAAGTCCCATGGGAAAGATCAAATATCTGTCTTTGAGTATTCTCTTTGGGCCAATCCAGGAGAAAAGCTTACCTTTGTTCCTCGGGACTCGAGGGTTTCTGTGAAGAGAGATAGATTCAAGAGAGGAAAATTCACGAATGGTGGAGATAAAAAGCTTTTATTTTATCCTAGAGAACTGCATGTATCAGTGACAGATGATAATTGTCAAGCATATATTCCTACATTTTCTTGTCGACCGGGTGTATATATTGAAGGGACAGTCTCGCCTCCTATTTCTGGTGTTCATATAAGGATTTTCGCTGCTGGAGACAGCAATGTCACTGGACTTAAAAGTGGGGAACTAATACTTGAAACGACTACTAGTACTGAAGGCTCCTTTGTGGCAGGTCCACTGTATGATGATGTCGGTTATACTGTTCAGGCTTCAAAGCCTGGCTATCATTTAAAACAAGTTGGGCCTCATTCCTTTAGTTGTCAGAAGCTTGGTCAGATTTCAGTACATATACATCACAAAGACAATGATAAAGAGCTCATTCCTTCAGTTCTGTTATCTTTAAGTGGTGATAATGGTTATAGAAACAACTCAGTATCTGGGGCCGGAGGAGCTTTCCTATTTGATAGTTTGTTTCCTGGAATGTTCTATTTGCGTCCTGTTTTGAAGGAATATGCTTTCTCACCTCCGGCACAGGCAATAGAGCTTGAATCAGGGGAGTTTAGAGAAGTTGTTTTCCAGGCCACACGAGTAGCTTACAGTGCTATTGGCGCAGTCTCTCTGTTATCTGGCCAACCCAAAGGAGGAGTTTCAGTTGAAGCTCGATCAGTGTCAAAAGGCTATTTTGAGGAAACTGTAACAGATTCCTCTGGGAATTATCGTCTTAGAGGACTACTGCCTGATACTGTCTATGAAGTGAAAGTAGCTAAAAGGGATGTTACGGGAAGTTCTAATATAGAGCGTGCATCTCCAGATTCTATTTCTGTCAAGGTTGGAACTGAGGATATCAAGGGTTTGGATTTTATAGTTTTTGAGGAGCCAGAAATGACAATTGTAAGTTGCCATGTTGAAGGAAATGGTACGGATGAACTTCGTAAACACCTGATGGTAGAAATCAGATCAGTTGAAGCAGGAGTTGACTCCGGCACCAGTATTCCCCTTATAGTTGCATTTCTTGTAGTTGCACTATTTATCAGCATCCCTAGATTGAATGATTTGTATCAAGCCACAATAGACATACCTGCGCCAGGAACCACAACGACTTCAAGAAAAGAAGTGAGGAAGCCAATGTTGCGTAAAAAGACTTTCTAA 3393 0.4103 MSIGDAFLLLLFVATYSISAASADSIYGCGGFVQASSSLVKSRKQTDAKLDYSHVTVELQTVDGLVKDRTQCAPNGYYFIPVYDKGSFVIKVNGPDGWSWDPEKVPVAVDNQGCNGNEDINFRFTGFSISGRVVGAGGESCSVKNGGPSNVKVELLSPSGDLVSSVLTSPSGSYLFTNVIPGKYELQASNPDIKVEVKVPNSFNELAFCASILSICSFCRWNWALEMGVIDDIFFVPGYSISGSVVAQGNPILGVHIFLYSEDVSEIKCLQGSAHGPRQEAALCHAVTDADGKFSFNSVPCGSYELVPYYKGENTVFDVSPSSVPVNVRHQHVTIPHKFQVTGFSVGGRVVDGNDMGVEGVKVIVDGHERSITDNQGYYKLDQVTSTHYTIEARKEHYKFKKLENYMVLPNMASIEDIVAVSYDICGLVRMVSSSQKATVALTHGPDNVKPQKKQTDGNGNFCFEVIPGEYRLSAIAASPDNAAGLMFAPSYIDVAIKSPLLNVEFSQALVNVRGARRKTISLTSESSEFLFSDVVPGKYRLEVKHSSSESVTKEDNWCWEKSFIDVNIGAEDLEGIVFVQKGYWVNVISTHEVNGYITQPDGSTVNLKIKKGSQHICVEFPGIHEFSFIDSCIFFGSSPVKIDTSSLLPIHLKGEKHLIKGQINVHSSLHDELPEKIVVDIYRDGADVADNAMAILKSHGKDQISVFEYSLWANPGEKLTFVPRDSRVSVKRDRFKRGKFTNGGDKKLLFYPRELHVSVTDDNCQAYIPTFSCRPGVYIEGTVSPPISGVHIRIFAAGDSNVTGLKSGELILETTTSTEGSFVAGPLYDDVGYTVQASKPGYHLKQVGPHSFSCQKLGQISVHIHHKDNDKELIPSVLLSLSGDNGYRNNSVSGAGGAFLFDSLFPGMFYLRPVLKEYAFSPPAQAIELESGEFREVVFQATRVAYSAIGAVSLLSGQPKGGVSVEARSVSKGYFEETVTDSSGNYRLRGLLPDTVYEVKVAKRDVTGSSNIERASPDSISVKVGTEDIKGLDFIVFEEPEMTIVSCHVEGNGTDELRKHLMVEIRSVEAGVDSGTSIPLIVAFLVVALFISIPRLNDLYQATIDIPAPGTTTTSRKEVRKPMLRKKTF 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03556 1130 SUPERFAMILY Carboxypeptidase regulatory domain-like 344 411 IPR008969 -
Vifa5g03556 1130 SUPERFAMILY Starch-binding domain-like 236 314 IPR013784 GO:0030246
Vifa5g03556 1130 SUPERFAMILY Cna protein B-type domain 129 194 - -
Vifa5g03556 1130 Gene3D Immunoglobulins 138 206 IPR013783 -
Vifa5g03556 1130 SUPERFAMILY Cna protein B-type domain 868 928 - -
Vifa5g03556 1130 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 20 1070 - -
Vifa5g03556 1130 FunFam Carbohydrate-binding-like fold 345 419 - -
Vifa5g03556 1130 Gene3D - 348 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03556 Vifa-Chr5 1158237538 1158254225 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03556 K26500 - gmx:100794049 1729.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03556 5 1158237538 1158254225 Vifa5g03556 5 1158237538 1158254225 ECH