Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03521 ATGGTGAACACTTCTTCTTCTTCTTCTCCGGTGAAAATCACCGTCTCCTCGGGCGGAAAAGCCGGAGGAAGTCGAAGAAGAAGCATCGGTCTAACAAGTCCACAACCACGTCCTTCCGTCTCGAACAACCCTAATTCAAACCGACTTTCCACCGGAAGGAGGTTATCAGCTGGTGGTAACTACTCCGATGGTACAGAAGAAACAACTACGGAATACGTATCATACACAGTTCACATTCCTCCTACGCCAGATCGTATGCCGCTTTCGTCTTCTCAAACAAGCCTCCCTGAAGAAAACGCGAGAAATAACCCTAACTACATCTCCGGTACAATCTTTACCGGAGGTTTTAACTCTGTCACACGAGGTCATGTCATCGAATGCTCCAACGAACGCGATGATCCTCAGCTGTTGAAATCTAAATTGATCTGCGGAATGAGAGGATGCGACGAGGACGCGATTAAGAGTTGTACTTGTGAGTGCGGGTTCAAAATTTGCAGGGATTGTTACAAAGAGTGTTGTGGAAATGGAAATCGAGGTGGTGGTAAATGTCCCGGATGTAAAGAACCTTACAACAATGTTAGTGATAGCGAAGAAGAAGAAGAGGAGGAGGAGGAAGAGGTGTCTGAGTGTGAAGATCAGGCTTTACCTTTACCTTCCATGGCGGAATTCAAGCTGGATAAGAGGCTTTCTCTTGTGAAATCTTTTAAAGCGCAGAATCAACCACCGGAGTTTGATCATACTCGTTGGCTCTTTGAAACTAAAGGAACTTATGGTTATGGAAATGCTGTTTGGCCTAAAGATGGATACGGTTCCAATGGATATGAACCTCCTCCGGATTTTGGAAAGAAAAGTAGAAGACCTTTGACTAGGAAAGTTGGGGTTTCAGCTGCAATTCTTAGTCCTTATAGGTTGCTAATTTTGATGCGTCTTGCTGCACTTGGTTTGTTTCTTACATGGAGGATTAGACACCGGAACCATGAGGCAATGTGGTTGTGGGGAATGTCAGTGACTTGTGAACTATGGTTTGCATTTTCATGGCTTCTTGATCAGCTTCCCAAGCTGTGTCCGGTGAACAGAGTTACTGATTTGGCTGTTTTGATAGATCGGTTCGAGTCACCGAATCTAAGAAATCCGAAAGGGAGGTCTGATCTCCCTGGAATTGATGTCTTTGTTTCAACAGCAGATCCAGAAAAGGAGCCACCTCTTGTCACTGCAAACACCATTTTGTCTATTCTTGCAGTTGATTATCCCGTGGAAAAAGTTGCTTGTTATTTGTCTGATGATGGTGGAGCTCTTTTGACATTTGAAGCTCTTGCAGAGACTGCTAGTTTTGCAAGAGTTTGGGTTCCTTTCTGTAAAAAGCACCATATTGAGCCTAGAAATCCTGAAGCTTATTTCGGCCAGAAGCGCGACTTTCTTAAGAACAAAGTTAGGTTGGACTTTGTTAGGGAGAGGAGAAGGGTGAAGAGGGAATATGATGAATTCAAAGTGAGGATCAATTCCTTACCTGAATCTATAAGGAGAAGATCAGATGCTTACAATGCTCATGAGGAGTTACGAGCCAAGAAGAAACAGATGGAAACGGGTTCTGATATTTCTGACCTCATTAAGGTCCCTAGAGCAACTTGGATGTCTGATGGTTCTCATTGGCCTGGAACTTGGCCATCAGCAGAACCCGACCACTCTAGAGGTGACCATGCTGGTATAATTCAGGCAATGTTGGCTCCTCCAAATGTAGAACCAGAATATGGCACAGAAGCTGATGGAGAGAACTTGATTGACTCAACAGATGTTGATGTTAGGTTGCCAATGCTTGTTTATGTGTCTCGTGAGAAGAGGCCGGGATACGATCACAACAAGAAAGCTGGCGCCATGAATGCTCTTGTTCGAACTAGTGCCATCATGTCCAATGGTCCGTTCATTCTCAATCTTGACTGTGATCATTACATCTACAACTCATTAGCCATCAGAGAAGGTATGTGCTTTATGCTTGACAGAGGTGGTGACAGGATATGCTATGTTCAATTCCCTCAAAGGTTTGAAGGTATTGACCCTAGCGATCGATACGCAAATCACAACACGGTTTTCTTTGATGTGAGCATGAGAGCTCTTGATGGTTTACAAGGTCCAATGTATGTTGGAACTGGCTGCATATTCAGAAGAACAGCTCTCTATGGTTTTAGTCCACCTAGAGCTTCTGAACATCATGGATGGTTTGGAAGGAGGAAAATTAAGTTGTTTTTGAGAAAGCCTAAGGTGTCAAAAAAGGAAGAAGATGAAGTTTGTGTGCCAATCAATTGCGATCACAACGACGATGACGCAGATATAGAATCCCTGCTTCTTCCCAAAAGGTTTGGAAATTCCACTTCTTTAGCTGCATCCATTCCAGTAGCAGAATATCAAGGAAGGTTGCTTCAAGATTCAAAAGGAAATGGAACACAAGGAAGGCCTGCAGGTTCTCTTGCCGTGCCTCGGGAGCCGTTAGATGCTGCTACTGTTGCTGAGGCAATTAGTGTCATATCTTGTTACTATGAGGATAAAACTGAGTGGGGGAAAAGAGTAGGGTGGATATATGGTTCTGTCACAGAAGATGTTGTGACTGGTTACAGAATGCACAATAGAGGATGGAGATCAGTTTACTGTGTGACAAAAAGAGATGCATTTAGAGGAACAGCTCCAATCAATTTAACAGACAGGCTACACCAAGTGCTTCGTTGGGCAACAGGACAGTTTATAGTCCAATCACTCAGCGTAACTTTTCTAGTGTTCTTGCTTGGAATCACAGTCACACTATGCTTACTTGCACTACTTGAGATCAAGTGGTCAGGTATCACACTACATGATTGGTGGAGAAATGAACAGTTTTGGGTAATCGGCGGAACAAGTGCACATCCCGCAGCTGTTTTACAAGGATTGTTGAAGGTAATAGCAGGAGTAGACATCTCATTCACATTGACATCAAAGTCAGCAACACCAGAAGATGGTGAAGATGAGTTTGCTGATCTTTATGTAGTGAAATGGAGCTTTCTAATGGTACCTCCAATCACAATTATGATGGTGAATACTATTGCTATTGCTGTGGGAGTAGCCAGGACTCTATATAGTCCATTTCCGCAATGGAGTAAACTTGTTGGAGGATTGTTTTTCAGCATTTGGGTTCTGTGTCATCTTTATCCGTTTGCAAAAGGGCTTTTGGGAAGAAGAGGAAAGGTTCCAACCATTATCTACGTTTGGTCTGGTTTACTCTCAATTATTATATCTTTGCTTTGGGTTTATGTTCACCCTCCTGCTGGTGGAAGGCCCCAAGATTTCATGAATTTCCAGTTCCCTTGA 3333 0.4344 MVNTSSSSSPVKITVSSGGKAGGSRRRSIGLTSPQPRPSVSNNPNSNRLSTGRRLSAGGNYSDGTEETTTEYVSYTVHIPPTPDRMPLSSSQTSLPEENARNNPNYISGTIFTGGFNSVTRGHVIECSNERDDPQLLKSKLICGMRGCDEDAIKSCTCECGFKICRDCYKECCGNGNRGGGKCPGCKEPYNNVSDSEEEEEEEEEEVSECEDQALPLPSMAEFKLDKRLSLVKSFKAQNQPPEFDHTRWLFETKGTYGYGNAVWPKDGYGSNGYEPPPDFGKKSRRPLTRKVGVSAAILSPYRLLILMRLAALGLFLTWRIRHRNHEAMWLWGMSVTCELWFAFSWLLDQLPKLCPVNRVTDLAVLIDRFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGALLTFEALAETASFARVWVPFCKKHHIEPRNPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMETGSDISDLIKVPRATWMSDGSHWPGTWPSAEPDHSRGDHAGIIQAMLAPPNVEPEYGTEADGENLIDSTDVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLAIREGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTGCIFRRTALYGFSPPRASEHHGWFGRRKIKLFLRKPKVSKKEEDEVCVPINCDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDSKGNGTQGRPAGSLAVPREPLDAATVAEAISVISCYYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGQFIVQSLSVTFLVFLLGITVTLCLLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGEDEFADLYVVKWSFLMVPPITIMMVNTIAIAVGVARTLYSPFPQWSKLVGGLFFSIWVLCHLYPFAKGLLGRRGKVPTIIYVWSGLLSIIISLLWVYVHPPAGGRPQDFMNFQFP 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03521 1110 MobiDBLite consensus disorder prediction 1 15 - -
Vifa5g03521 1110 MobiDBLite consensus disorder prediction 1 68 - -
Vifa5g03521 1110 MobiDBLite consensus disorder prediction 28 68 - -
Vifa5g03521 1110 FunFam cellulose synthase-like protein D3 592 729 - -
Vifa5g03521 1110 SUPERFAMILY RING/U-box 136 191 - -
Vifa5g03521 1110 MobiDBLite consensus disorder prediction 80 102 - -
Vifa5g03521 1110 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 592 740 IPR029044 -
Vifa5g03521 1110 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 286 913 - -
Vifa5g03521 1110 MobiDBLite consensus disorder prediction 85 102 - -
Vifa5g03521 1110 Pfam Cellulose synthase 387 909 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vifa5g03521 1110 Coils Coil 193 213 - -
Vifa5g03521 1110 SUPERFAMILY Nucleotide-diphospho-sugar transferases 402 921 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03521 Vifa-Chr5 1150270503 1150274774 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03521 26 1110 Glycosyltransferase AT3G03050 61.446 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03521 K00770 - gmx:100804687 1877.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03521 5 1150270503 1150274774 Vifa5g03521 5 1150270503 1150274774 ECH