Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03515 ATGGCATCTACTACTCCTTCCATGTCAGTTTCTTTGGAGTGTGTGAACGTGTGTAATTTCTGGAGAGGGGATGGAAATGGAAGACATGATTGTAGTTATCAATTATGTGCGTGGAAATCTCCTAGGGTTCTTACTGGATTTCTTGCTACTACGGCTCGTCCTCATCACTATTTGTTGAATGGTCGAAATGAAAGAAGGAATCGATATGCTTTTGCATGTGAAGCCTTTAGTATAGTAGGTTCATATTCCGATGAAGCACTTGGCAATGGCATCGCTCATCGTGATAGATTCTCTAGATCTATCTTTTCTAGATTTGCTTCTAGACAATGGAAATTGTCTTGTTCTTCGGCTTTTTCTTTGGATACTGACAGCGAGTTTTCCCCTAGAAGCTTGTGGGAGGATCTTAAGCCCGTGATCTCATATCTTCCTCCTAAAGAACTAGAGTTAGTCTATAATGCTTTTATGTTGGCATTTAAAGCTCATGATGGTCAGAAAAGGCGCAGCGGTGAACCCTTCATCATTCATCCAGTTGAGGTTGCACGAATTCTTGGAGAACTTGAACTTGATTGGGAGTCAATTGCTGCTGGATTACTTCATGACACGGTTGAAGATACAGATTTTGTGACTTTTGAGAGGATAGAGGAAGAATTTGGTGCTACGGTGCGCCACATTGTGGAAGGAGAGACCAAGGTGTCAAAGCTGGGAAAGTTGAAGTACAAGAATGAAAAAGATTCTGTTCAGGATGTGAAAGCAGAGGACCTACGACAAATGTTTCTGGCTATGACTGAGGAGGTTCGTGTTATTATCGTCAAATTAGCAGATAGGTTACATAACATGCGCACTCTATCACACATGCCTCCACATAAACAGGCTAGCATTGCGATGGAGACATTACAGGTATTTGCTCCTTTGGCAAAGTTGCTCGGGATGTATCAAATTAAGTCAGAACTAGAAAACCTATCATTTATGTACACAAATGCTGAAGATTATGCAAAGGTGAAGAGAAGAGTTGCCGACTTATTCAAAGAACATGAGAAAGATCTTTTAGAGGCAAACAAAATATTGTTAAAGAAAATCCAAGATGATCAATTCTTAGACCTTTTGACAGTTAAAACGGAAGTTCGTGCTGTGTGTAAAGAGCCTTACAGTGTCTATAAAGCTGTGCTCAAATCTAAAGGTTTGATCAATGAGATTAACCAAATTGCACAGCTACGTATCATTATTAAACCAAAGTCGTGCATTGGGGTTGGGCCTTTATGCAGTCCACAGCTGATTTGCTATCATGTTCTAGGGTTGATCCACGGAATCTGGACCCCAAATCCTAGATCTATGAAAGATTATATTGCAACCCCTAAACCAAATGGGTACAAGAGTCTTCATAGCACTGTGATTCCGTTTTTGTATGAGAGTATGTTCAGGCTTGAAATCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCAGCTCATTATAGTGGGAGAGAATTTGTTACTGGATTGGTTGGAAGTGCAGTGCCCAGCAGTAAAAACTCGAGGGGGAAGACAGCGTGTCTTAGCAATGCCAACATTGCACTCAGAATTGGGTGGCTCAATGCTATTAGGGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAGTTTGTGGACACTGTTACAAGAGATCTTTTGGGCAGTCGTGTCTTTGTATTTACACCCAGGGGAGAGATTAGGAATCTTCCTCAAGGTGCTACAGTAATTGATTATGCTTATATGATACACACTGAAATTGGCAACAAGATGGTAGCTGCAAAGGTCAATGGCAATCTTGTTTCTCCTGCTCGCGTGCTTGCTAATGCAGAAGTTGTAGAGATAATCACATATAATGCACTTTCCAGCAAATCGGCTTTTCAAAGGCATAAGCAATGGTTGCAACATGCTAAAACACGGAGTGCTAGACATAAAATAATGAAATTTCTGAAGGAACAAGCTGCACTTTCTGCTGCTGATATCACTACAGAAGCAGTTAATGACTTTCTAAGTGATTCTGACAGAGATAGAGAATCTGAAAAGCTGTCAAATGGTTCCAGTGGTTCTAAAGATAAGAGCGGGAAAATATTATTGAACGGTGTGGAAACATCAACTTCAGAAAGAAGTGAGAGTGTCCTCCAGAATAAGAATGGAAGTGCCTGGACCCCTAAGCTCAATGGAAAACACAATAAGCACGTGCATCATTTAAGTTTGAATGGCAAAGGGGACATGATGCTGCAGGGAAACCATGTTGCTAATATGATTCAAGTAAACAATCCAAAATACAAAGAAGTCCTGCCAGGTTTAGAAAGATGGAAAGCCCATAAAATTGCCTCGTGGCACAATATAGAAGGACACTCCATCCAATGGTTATCTATAATATGCATAGACCGAAGAGGCATGATGGCGGAGGTCAGTACAGCATTGGCCACAGCAGACATAACCATATGTTCTTGTGTGGCTGAGATTGATCGAGGAAGGGGAATGGCTGTAATGCTATTTCATGTAGAAGGAAATTTAGAAAATTTGGTGAATGCTTGCTCTAGAGTAGATCAAATACTGGGTGTTTTGGGATGGTCTACTGGCTGCAGCTGGCCAAGCTTGATGGAAAACCATGGTGTTCTCGAATGCTAG 2658 0.4123 MASTTPSMSVSLECVNVCNFWRGDGNGRHDCSYQLCAWKSPRVLTGFLATTARPHHYLLNGRNERRNRYAFACEAFSIVGSYSDEALGNGIAHRDRFSRSIFSRFASRQWKLSCSSAFSLDTDSEFSPRSLWEDLKPVISYLPPKELELVYNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTDFVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNEKDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQASIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLFKEHEKDLLEANKILLKKIQDDQFLDLLTVKTEVRAVCKEPYSVYKAVLKSKGLINEINQIAQLRIIIKPKSCIGVGPLCSPQLICYHVLGLIHGIWTPNPRSMKDYIATPKPNGYKSLHSTVIPFLYESMFRLEIQIRTEEMDLIAERGIAAHYSGREFVTGLVGSAVPSSKNSRGKTACLSNANIALRIGWLNAIREWQEEFVGNMSSREFVDTVTRDLLGSRVFVFTPRGEIRNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPARVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLKEQAALSAADITTEAVNDFLSDSDRDRESEKLSNGSSGSKDKSGKILLNGVETSTSERSESVLQNKNGSAWTPKLNGKHNKHVHHLSLNGKGDMMLQGNHVANMIQVNNPKYKEVLPGLERWKAHKIASWHNIEGHSIQWLSIICIDRRGMMAEVSTALATADITICSCVAEIDRGRGMAVMLFHVEGNLENLVNACSRVDQILGVLGWSTGCSWPSLMENHGVLEC 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03515 885 Gene3D Beta Polymerase, domain 2 327 481 IPR043519 -
Vifa5g03515 885 SMART hd_13 168 288 IPR003607 -
Vifa5g03515 885 SUPERFAMILY Nucleotidyltransferase 330 500 IPR043519 -
Vifa5g03515 885 SUPERFAMILY HD-domain/PDEase-like 136 325 - -
Vifa5g03515 885 CDD HDc 170 301 IPR003607 -
Vifa5g03515 885 MobiDBLite consensus disorder prediction 679 693 - -
Vifa5g03515 885 MobiDBLite consensus disorder prediction 679 737 - -
Vifa5g03515 885 CDD NT_Rel-Spo_like 369 489 IPR007685 GO:0015969
Vifa5g03515 885 Gene3D - 798 865 - -
Vifa5g03515 885 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 8 880 - -
Vifa5g03515 885 FunFam GTP pyrophosphokinase (RelA/SpoT) 558 632 - -
Vifa5g03515 885 FunFam GTP pyrophosphokinase RelA 131 326 - -
Vifa5g03515 885 Pfam TGS domain 566 625 IPR004095 -
Vifa5g03515 885 Gene3D - 559 634 IPR012675 -
Vifa5g03515 885 Pfam HD domain 153 310 - -
Vifa5g03515 885 ProSiteProfiles HD domain profile. 172 279 IPR006674 -
Vifa5g03515 885 Pfam Region found in RelA / SpoT proteins 379 495 IPR007685 GO:0015969
Vifa5g03515 885 CDD TGS_RSH 567 625 IPR033655 -
Vifa5g03515 885 SMART RelA_SpoT_2 379 501 IPR007685 GO:0015969
Vifa5g03515 885 MobiDBLite consensus disorder prediction 694 732 - -
Vifa5g03515 885 ProSiteProfiles TGS domain profile. 562 625 IPR004095 -
Vifa5g03515 885 SUPERFAMILY TGS-like 553 625 IPR012676 -
Vifa5g03515 885 Gene3D Hypothetical protein af1432 131 325 - -
Vifa5g03515 885 ProSiteProfiles ACT domain profile. 798 873 IPR002912 -
Vifa5g03515 885 SUPERFAMILY ACT-like 798 864 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03515 Vifa-Chr5 1149078907 1149086841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03515 182 497 EF-hand Containing Proteins AT3G17470 30.368 1.03e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03515 K00951 - gmx:100786637 1471.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03515 5 1149078907 1149086841 Vifa5g03515 5 1149078907 1149086841 ECH