Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03514 ATGTCTACGCACGCTAAGTTTACTCGAGTTCCCAGTATCAGAGACAGAGTTCAAGATACTCTCTCTGCTCACCGGAACGAACTCATTTCTCTTCTCTCCAGGTATGTTGCTCAGGGGAAAGGGATCTTGCAGCCGCATAATTTGATTGATGAACTTGAAAATATACCTGGCGAGGATCATGCAACACTGGATCTTAAAAATGGTCCATTTGCCCAAATTATCAACTCTGCACAGGAAGCCATAGTTTTGCCTCCTTTTGTGGCAATAGCAGTTCGTCCCAGACCAGGTGTTTGGGAATATGTCCGTGTTAATGTCTTTGAACTCAGTGTGGAGCAGTTGAGTGTTTCTGAATATCTCAGCTTCAAAGAAGAACTTGTAGAAGGAAAGAGTAATGATAATATTATATTGGAGCTTGACCTTGAGCCATTTAATGCATCATTTCCTCGCCCAACTCGCTCGTCTTCCATTGGCAATGGTGTGCAGTTTCTCAATCGCCACCTCTCGTCAAATATGTTTCGTAACAAAGATTGCTTGGAACCCTTGCTTGATTTCCTTCGTGTTCACACATATAAAGGCCATGCACTGATGTTAAATGATAGAATACAAAGCATTTCCAAACTTCAGTCTGCGTTGGTCAAGGCCGAGGATCATCTTTCTAAGCTTACGCCTCATACACTCTATTCTGAGTTTGAATATGAATTACAAGGAATGGGGTTTGAGAGAGGTTGGGGTGATACTGCTGCTCGGGTTTTAGAGATGATGCATCTTCTATTGGATATTCTTCAGGCCCCCGACCCTTCTACACTAGAGACTTTTCTTGGGAGAGTGCCTATGGTGTTCAACGTTGTTATATTGTCTCCGCATGGCTTCTTTGGGCAAGCCAATGTCCTCGGTTTGCCTGACACTGGTGGCCAGGTTGTTTATATACTAGATCAAGTGCGGGCCCTTGAGAGTGAGATGCTCCTTCGGGTCAAGAAACAAGGACTTGATGTCACTCCTAGAATTCTAATTATTACTAGGTTAATACCTGATGCAAAGGGGACGACATGCAACCAGCGACTAGAAAGAGTCAGTGGCACTGAATACACACATATTTTGCGTGTTCCATTCCGATCAGAAAAAGGAATTCTTCGTAAATGGATCTCAAGGTTTGATGTCTGGCCTTTCCTGGAAACTTTTGCTGAGGATGTTGCTAGTGAAATTACTGCTGAGTTACAATGTTATCCTGATTTCATCATAGGGAACTACAGTGATGGAAATCTTGTTGCATCTTTATTGGCTTACAAAATGGGAGTTACCCAGTGCACAATCGCACATGCACTGGAGAAGACAAAATATCCAGATTCAGATATATATTGGAAGAAATTCGAAGATAAATACCATTTTTCTTGTCAGTTCACTGCTGATCTAATAGCCATGAACAATGCTGATTTTATCATCACCAGTACATACCAAGAGATTGCTGGAACGAAGAATACTATTGGCCAGTATGAAAGTCACACTGCTTTTACTCTTCCGGGATTGTATAGAGTCGTCCACGGCATTGATGTTTTTGATCCCAAGTTCAACATTGTCTCTCCTGGAGCAGATATGACAATATATTTCCCCTACTCTGATAAGGAGAAAAGACTCACTGCCCTACACAGTTCAATTGAAAAGCTATTATACGATACCGAGCAGACCGATGACTACATCGGTTCACTTACAGACCGGTCAAAGCCTATAATTTTCTCCATGGCAAGGCTAGACAGAGTTAAAAACATAACAGGATTGGTAGAAAGCTACGCTAAGAACAGCAAATTGAGGGAACTTGTCAATCTTGTCGTAGTAGCTGGTTATATCGATGTCAAAAAGTCCAGTGACAGAGAAGAAATTGCAGAGATTGAGAAGATGCATGATCTCATGAAGCAATACAATTTGAATGGCGAGTTTCGGTGGATTACTGCTCAAACAAATAGAGCACGTAATGGGGAGCTGTATCGGTACATAGCAGATACAAAAGGCGCTTTCGTTCAGCCCGCTTTCTATGAAGCTTTTGGACTTACAGTTGTGGAGGCCATGACTTGTGGGCTCCCTACGTTTGCTACTAGCCATGGTGGCCCTGCTGAGATCATCGAGCATGGTGTATCTGGATTTCATATTGATCCTTATCATCCTGACCAAGCATCAGAGCTATTGGTTGATTTTTTCCAACGATGTAAGGAGGATCCAAGTCACTGGAATAAAATATCTGATGGTGGCCTTCAAAGAATATACGAAAGGTACACATGGAAGATCTATTCTGAAAGGCTTATGACCTTGGCTGGAGTTTATAGTTTCTGGAAATATGTTTCCAAACTAGAGAGACGGGAAACACGAAGATATCTTGAGATGTTCTACATTCTTAAGTTCCGTGATTTGGCAAATTCTGTTCCAATAGCAAAGGATGATGCAAATTAA 2439 0.4198 MSTHAKFTRVPSIRDRVQDTLSAHRNELISLLSRYVAQGKGILQPHNLIDELENIPGEDHATLDLKNGPFAQIINSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVFELSVEQLSVSEYLSFKEELVEGKSNDNIILELDLEPFNASFPRPTRSSSIGNGVQFLNRHLSSNMFRNKDCLEPLLDFLRVHTYKGHALMLNDRIQSISKLQSALVKAEDHLSKLTPHTLYSEFEYELQGMGFERGWGDTAARVLEMMHLLLDILQAPDPSTLETFLGRVPMVFNVVILSPHGFFGQANVLGLPDTGGQVVYILDQVRALESEMLLRVKKQGLDVTPRILIITRLIPDAKGTTCNQRLERVSGTEYTHILRVPFRSEKGILRKWISRFDVWPFLETFAEDVASEITAELQCYPDFIIGNYSDGNLVASLLAYKMGVTQCTIAHALEKTKYPDSDIYWKKFEDKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTIGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMTIYFPYSDKEKRLTALHSSIEKLLYDTEQTDDYIGSLTDRSKPIIFSMARLDRVKNITGLVESYAKNSKLRELVNLVVVAGYIDVKKSSDREEIAEIEKMHDLMKQYNLNGEFRWITAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATSHGGPAEIIEHGVSGFHIDPYHPDQASELLVDFFQRCKEDPSHWNKISDGGLQRIYERYTWKIYSERLMTLAGVYSFWKYVSKLERRETRRYLEMFYILKFRDLANSVPIAKDDAN 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03514 812 PANTHER - 7 809 IPR012820 GO:0005985|GO:0016157
Vifa5g03514 812 FunFam Sucrose synthase 283 567 - -
Vifa5g03514 812 FunFam Sucrose synthase 12 148 - -
Vifa5g03514 812 Gene3D Glycogen Phosphorylase B; 530 757 - -
Vifa5g03514 812 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 298 766 - -
Vifa5g03514 812 NCBIfam sucrose synthase 25 806 IPR012820 GO:0005985|GO:0016157
Vifa5g03514 812 Gene3D - 12 148 - -
Vifa5g03514 812 Gene3D Glycogen Phosphorylase B; 283 800 - -
Vifa5g03514 812 Pfam Glycosyl transferases group 1 570 742 IPR001296 GO:0016757
Vifa5g03514 812 Gene3D - 149 278 - -
Vifa5g03514 812 FunFam Sucrose synthase 149 278 - -
Vifa5g03514 812 Pfam Sucrose synthase 9 556 IPR000368 GO:0005985|GO:0016157
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03514 Vifa-Chr5 1148999591 1149004686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03514 6 810 Glycosyltransferase AT4G02280 83.106 0.0 1434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03514 K00695 - gmx:100793371 1480.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03514 5 1148999591 1149004686 Vifa5g03514 5 1148999591 1149004686 ECH