Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03508 ATGGAAAAAATAGAGCACACAACGGTTCACACCAATGGAATAAAAATGCACGTTGCATCAATCGGTTCAGGTCCAGTCATACTCTTCCTCCACGGCTTCCCTGAGCTTTGGTATTCATGGCGCCATCAGCTTCTTTCCCTCTCCGCTCTCGGTTACCGCGCCGTCGCGCCTGACCTTCGCGGCTACGGCGACACCGACGCACCGTCTTCTCCATCTTCTTACACCGCCCACCACATCGTCGGTGACCTCGTCGGACTTCTCGATGCTCTGGCTGTGGATCGAGTGTTTCTGGTTGGGCATGATTGGGGAGCCGCTATGGCGTGGTATTTTTGTTTGATGAAGCCTGATCGGGTTAAGGCTTTGGTTAATATGAGTGTTGTGTATCGATCGAGGAATCCGGTTAGGAAGCCTGTGCAAACTATGAGGGCTTTGATGGGGGAGGATTATTATATGTGCAGGTTTCAGAAACCCGGGGAGGTCGAAGAAGAGTTCGCACGTGCTGGTGCTGCAAGAATAATAAAATCATTTCTTACACTGCGTGATACACGTCCACTTTGTGTGCCAAAGGGGATAGGATTTGGTGGTTCCCCTAACACTCCTATAACTTTACCTGAATGGCTTTCCGAAGAAGATGTCAATTATTATGCTACCAAATTTGAACAGAGTGGCTTCACTGGTGGTTTGAATTACTATCGCGCTCTTGATCTAACCTGGGAACTGATGGCACCATGGACTGGAGATCAGATAAAAGTACCTGTCAAGTTCATTGTTGGAGACCTAGACCTTACGTATAACACTCCAGGCATTAGGGAGTATATACATAATGGTGGCTTTAAGAGAGAAGTACCATACTTGCAAGAAATGGTTGTGATGGAAGGAGTAGCTCACTTCATAAATCAGGAAAAACCTGAAGAGATCAGCGCGCACATATATGACTTCATCAAGAAATTTTAA 954 0.4686 MEKIEHTTVHTNGIKMHVASIGSGPVILFLHGFPELWYSWRHQLLSLSALGYRAVAPDLRGYGDTDAPSSPSSYTAHHIVGDLVGLLDALAVDRVFLVGHDWGAAMAWYFCLMKPDRVKALVNMSVVYRSRNPVRKPVQTMRALMGEDYYMCRFQKPGEVEEEFARAGAARIIKSFLTLRDTRPLCVPKGIGFGGSPNTPITLPEWLSEEDVNYYATKFEQSGFTGGLNYYRALDLTWELMAPWTGDQIKVPVKFIVGDLDLTYNTPGIREYIHNGGFKREVPYLQEMVVMEGVAHFINQEKPEEISAHIYDFIKKF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03508 317 PRINTS Alpha/beta hydrolase fold signature 111 124 IPR000073 -
Vifa5g03508 317 PRINTS Alpha/beta hydrolase fold signature 97 110 IPR000073 -
Vifa5g03508 317 PRINTS Alpha/beta hydrolase fold signature 51 66 IPR000073 -
Vifa5g03508 317 PRINTS Epoxide hydrolase signature 111 124 IPR000639 GO:0003824
Vifa5g03508 317 PRINTS Epoxide hydrolase signature 251 267 IPR000639 GO:0003824
Vifa5g03508 317 PRINTS Epoxide hydrolase signature 291 313 IPR000639 GO:0003824
Vifa5g03508 317 PRINTS Epoxide hydrolase signature 51 66 IPR000639 GO:0003824
Vifa5g03508 317 PRINTS Epoxide hydrolase signature 31 49 IPR000639 GO:0003824
Vifa5g03508 317 PRINTS Epoxide hydrolase signature 97 110 IPR000639 GO:0003824
Vifa5g03508 317 PANTHER EPOXIDE HYDROLASE 5 315 - -
Vifa5g03508 317 Gene3D alpha/beta hydrolase 1 317 IPR029058 -
Vifa5g03508 317 FunFam Epoxide hydrolase 2 317 - -
Vifa5g03508 317 SUPERFAMILY alpha/beta-Hydrolases 2 316 IPR029058 -
Vifa5g03508 317 Pfam alpha/beta hydrolase fold 25 145 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03508 Vifa-Chr5 1148057794 1148060641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03508 1 317 Acyl Lipid Metabolism Gene Families AT4G02340 70.032 7.08e-176 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03508 - - gmx:100799903 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03508 5 1148057794 1148060641 Vifa5g03508 5 1148057794 1148060641 ECH