Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03492 ATGGAAACAACTACATCGATGGATGTCGAGGAACAACAACCTTCGCCAACACCCAACAACGTTAAACACTTCGGTCTAAAAAATTCCATTCAAACCAATTTCGGCGACGACTATGTTTTCCAAATAATCCCAAAGGATGATTGGAGTGCAATGGCGGTTTCACTGTCAACGAATGCGGTGAAACTGTATTCACCAGTGGTGGGTCAGTATTATGGGGAGTGCAAGGGTCACTCTGGAACTATCAACCAGATTTTGTTTTCGGGTCCTTCGAATCCTCATGTTCTTAGCTCGTGTTCTTCAGATGGCACTATCCGAGCTTGGGACACAAGATCATTTCAGCAGGTTTCTGTTCTCAATGCCGGTCCTTCTCAAGAAGTCTTTAGTTTCTCTACTGGAGGGCCTAATGGAAGTTTAGTTGCTGCCGGTTGTGATTCGCAGGTACTGTTATGGGATTGGAGAAATAACAAGCAAATTGCTTGTCTAGAAGATTCTCATATGGATGATGTAACTCAGGTTCATTTTGTCCCTGATGAACCAGGCAAGCTCATTTCGGCTTCAGTAGATGGGTTGATCTGCATATTTGATACCAGCGGAGATATCAATGATGATGATCATCTAGATTCAGTGATTAATGTGGGAACTTCAATTGCCAAGGTGGGTTTTTTTGGAGAGAGTTATCAAAAGCTTTGGTGTTTAACACATATTGAAACCGCAAGTATCTGGGATTGGAAAGATGGTAGAAATGAAGTAAACTTCTCAGAAGCTCGTACTTTAGCTTCTGAAAGTTGGAATTTGGATCATGTTGACTATTTTGTTGACTGTCACTACTCGAAAGAAGCTGAAAAACTATGGTTGATTGGTGGCACAAATGCGGGTACATTAGGTTATTTTCCTGTAAATTACAGTGGAACGGCAACAATTGGAGCTGCAGAAGCAATTCTTGAAGGTGGCCATACAAGTGTTGTTAGAAGTGTTCTACCCATGTCCAGAATTCATAGTGAACTTGGTAGTAGTAGTAGTAGTCGTCATAGCTCAGGCATTTTTGGATGGACGGGTGGGGAAGATGGAAGGCTATGCTGTTGGTTGTCCGATGATTCCCCTCAAAAAAATCAATCTTGGATTTCAAGTACATTGGTTATGAAACCAGAAAGAACTTGCAAGAAAAATCGTCATCAACCCTACTAA 1185 0.4169 METTTSMDVEEQQPSPTPNNVKHFGLKNSIQTNFGDDYVFQIIPKDDWSAMAVSLSTNAVKLYSPVVGQYYGECKGHSGTINQILFSGPSNPHVLSSCSSDGTIRAWDTRSFQQVSVLNAGPSQEVFSFSTGGPNGSLVAAGCDSQVLLWDWRNNKQIACLEDSHMDDVTQVHFVPDEPGKLISASVDGLICIFDTSGDINDDDHLDSVINVGTSIAKVGFFGESYQKLWCLTHIETASIWDWKDGRNEVNFSEARTLASESWNLDHVDYFVDCHYSKEAEKLWLIGGTNAGTLGYFPVNYSGTATIGAAEAILEGGHTSVVRSVLPMSRIHSELGSSSSSRHSSGIFGWTGGEDGRLCCWLSDDSPQKNQSWISSTLVMKPERTCKKNRHQPY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03492 394 ProSitePatterns Trp-Asp (WD) repeats signature. 95 109 IPR019775 -
Vifa5g03492 394 PANTHER UNCHARACTERIZED 20 392 IPR039328 -
Vifa5g03492 394 Gene3D - 21 220 IPR015943 GO:0005515
Vifa5g03492 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 74 111 - -
Vifa5g03492 394 SMART WD40_4 111 151 IPR001680 GO:0005515
Vifa5g03492 394 SMART WD40_4 154 195 IPR001680 GO:0005515
Vifa5g03492 394 SMART WD40_4 67 108 IPR001680 GO:0005515
Vifa5g03492 394 Pfam WD domain, G-beta repeat 71 108 IPR001680 GO:0005515
Vifa5g03492 394 Pfam WD domain, G-beta repeat 126 151 IPR001680 GO:0005515
Vifa5g03492 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 74 117 IPR001680 GO:0005515
Vifa5g03492 394 SUPERFAMILY WD40 repeat-like 37 361 IPR036322 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03492 K24758 - gmx:100794786 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03492 5 1144504600 1144507317 Vifa5g03492 5 1144504600 1144507317 ECH