Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03491 ATGCTTCCTCTTTCCCTTCTTAAGACTGCACAAGGCCACCCTATGTTGGTGGAGCTGAAAAATGGTGAGACTTATAATGGACATTTGGTTAATTGTGATACATGGATGAATATTCATCTCCGAGAAGTTATTTGTACCTCTAAAGATGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGGGGAAATACGATTAAGTATCTTCGAGTTCCCGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAGAGCCGAACAGACCGCAAGCCGCCTGGTGTTGGACGTGGTAGGGGAAGAGGTAGGGAGGATGGTGCTGGTGCTGGTGGACGCCAAACAAAAAGCATTGGGCGTGGTTTTGATGATGGTGGTGCTAGAGGAGCCGGAGGCCGAGGCAGGGGTGGCCCAAGTGGAAAGCCTGGAGGAAGCAGAGGTGCTGGACGAGGTAGAGGTTGA 456 0.4912 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGAGAGGRQTKSIGRGFDDGGARGAGGRGRGGPSGKPGGSRGAGRGRG 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03491 151 Pfam LSM domain 6 70 IPR001163 -
Vifa5g03491 151 SMART Sm3 5 71 IPR001163 -
Vifa5g03491 151 ProSiteProfiles Sm domain profile. 2 75 IPR047575 GO:0003723
Vifa5g03491 151 Gene3D - 1 83 - -
Vifa5g03491 151 MobiDBLite consensus disorder prediction 79 151 - -
Vifa5g03491 151 FunFam U6 snRNA-associated Sm-like protein LSm4 1 83 - -
Vifa5g03491 151 CDD LSm4 2 77 IPR034101 GO:0000398|GO:0000956
Vifa5g03491 151 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 2 129 IPR027141 GO:0006396
Vifa5g03491 151 MobiDBLite consensus disorder prediction 79 107 - -
Vifa5g03491 151 SUPERFAMILY Sm-like ribonucleoproteins 3 133 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03491 Vifa-Chr5 1144501337 1144503530 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03491 K12623 - pvy:116139016 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03491 5 1144501337 1144503530 Vifa5g03491 5 1144501337 1144503530 ECH