Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03488 ATGTTAGACAAGCTTTTGGGAGCTCAAAGGGCTAGAAAATTTCACAGATTTCTCCGACATTGTAAGGTCACAATCCTCTGTCTCCTCCTCACCATTGTTGTCCTACGTGGCACTATCGGCGCCGGGAAATTCGGTACGCCGGAGCAAGATTTCGTTGACATTCGTAACCGTTTCACCTCTCGTAAGCTACCTGAATCTCATCGCAGTCTCGCCGAGACTCATTCAACACCAACGTCTTCCTCTCGTTCAGACATTTCTACAAACAATTATAATGCATTTGATATTAACACAATATTGGTCGATGAAGAGGAACAAGAAGAGGACAAAAAACCCAGCTCCGAGAAAGCTTATCGTTTAGGACCGAAGATTTCGAATTGGGATAAGCAGAGATCAAAATGGCTTATTGAAAACCCTGATTTTCCGAATTTTGTTCGTCCCGGGAAGCCTCGTGTGCTTTTGGTAACTGGGTCGTCGCCGAAACCGTGTGAGAATCCGGTGGGTGATCATTACTTGTTGAAGTCTATTAAGAACAAGATTGATTATTGTCGTTTACATGGAATTGAAGTGTTTTACAATATGGCTCTTCTTGATGCTGAAATGGCTGGTTTTTGGGCGAAGCTTCCTTTGATTCGGAAGCTTCTTTTGTCACATCCTGAAGTGGAATTTCTCTGGTGGATGGACAGTGATGCTATGTTTACGGATATGGCGTTTGAGGTTCCGTGGGAGAGGTATAAAGACTCGAATTTCGTGATGCATGGTTGGAATGAGATGGTGTATGATGAGAAGAATTGGATTGGGTTGAATACTGGGAGTTTTTTGTTGAGGAACTGTCAATGGTCATTGGATATTCTTGATGTTTGGGCACCAATGGGACCGAAAGGGAAAGTTAGGGAAGAAGCGGGGAAGATACTTACGCGCGAGCTCAAAGATCGGCCGGTTTTTGAAGCGGATGATCAGTCTGCTATGGTTTATTTGTTGGCGAAGGAGAAGGAAAAATGGGGTGACAAGGTTTATCTTGAGAATGGTTATTACTTGCATGGTTATTGGGGGATTTTGGTTGATAGATATGAGGAAATGATTGAGAAATATCATCCTGGTTTTGGTGATCATAGATGGCCATTGGTGACTCATTTTGTGGGATGTAAGCCTTGTGGGAAGTTTGGTGATTATCCTGTTGAGAGATGCTTGAAGCAAATGGATAGAGCTTTTAACTTTGGTGATAATCAGATATTGCAGATTTATGGATTCACACACAAGTCATTGGTTAGTAGGAGAGTTAGGAGAATAAGGAATGAAACTAGTAATCCTCTTGAGGTTAAAGATGAATTTGGTTTGCTTCATCCTAGTTCTAAAGCTGTTAAGGTATCTTCTTCTAGCTGA 1380 0.421 MLDKLLGAQRARKFHRFLRHCKVTILCLLLTIVVLRGTIGAGKFGTPEQDFVDIRNRFTSRKLPESHRSLAETHSTPTSSSRSDISTNNYNAFDINTILVDEEEQEEDKKPSSEKAYRLGPKISNWDKQRSKWLIENPDFPNFVRPGKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRLHGIEVFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDSNFVMHGWNEMVYDEKNWIGLNTGSFLLRNCQWSLDILDVWAPMGPKGKVREEAGKILTRELKDRPVFEADDQSAMVYLLAKEKEKWGDKVYLENGYYLHGYWGILVDRYEEMIEKYHPGFGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQIYGFTHKSLVSRRVRRIRNETSNPLEVKDEFGLLHPSSKAVKVSSSS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03488 459 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 9 442 IPR008630 GO:0016020|GO:0016757
Vifa5g03488 459 MobiDBLite consensus disorder prediction 70 88 - -
Vifa5g03488 459 Pfam galactosyl transferase GMA12/MNN10 family 148 387 IPR008630 GO:0016020|GO:0016757
Vifa5g03488 459 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 147 303 IPR029044 -
Vifa5g03488 459 MobiDBLite consensus disorder prediction 63 88 - -
Vifa5g03488 459 FunFam xyloglucan 6-xylosyltransferase 2 147 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03488 Vifa-Chr5 1143379596 1143380975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03488 1 459 Glycosyltransferase AT3G62720 76.739 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03488 K08238 - gmx:100794266 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03488 5 1143379596 1143380975 Vifa5g03488 5 1143379596 1143380975 ECH