Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03484 ATGGCCATGCTTGCAGCGCAACCATTCTTGTTCTTCTCATCACAATCAAATTCCAGAATCTCAAGACCATGCCTTCCCCTTCCTCAACTCAGCTCCATTCATCTACGTTCACGCAATTCTAAGATTCAGTTTCCACTAATTTCATGTTCTTCATCTCAAACCCCAGAAACTCAAACTCAAACTCAAACTGCTGAATCTTGTGTCAATTTGGGTCTTCAACTTTTCTCCAAAGGAAAGGTTAAAGGTGCTTTGACACAGTTTGAAACAGCGCTTTCTTTGAATCCAAATCCTCTAGAGGCCCAAGCTGCTTTCTATAACAAAGCTTGCTGCCATGCTTACAGAGGAGAAGGAAAGAAAGCTGCTGAATGTCTTCGCACTGCCTTAAGAGATTACAATCTAAAATTTGGCACAATTCTCAATGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCGAGACTTGGTGGGGAAGATGTCGGTTCTAGTTTTCGAAGAGATTTAAAACTTATCAGTGAAGTTCAAGCACCGTTTCGTGGGATTAGGAGATTCTTTTACGTAGCATTTACAGCATCCGCAGGAATATCATTGTTCTTTAATGTACCAAGGATATTACGTGTAATTCAAGGTGGTGATGGTGCTCCTGATCTCTTGGAAACCGCTGGCAACGCTGCCGTTAACATTGGAGGTATTGTTGTTTTTGTGGCATTATTCCTTTGGGAGAATAAAAAAGAGGAGGAACAGCTTGCGCAAATATCCCGAAACGAGACACTATCAAGGTTGCCTTTGCGCCTGTCATCTAAACGTGTAGTTGAACTCGTGCAGCTAAGGGACACAGTTAGGCCGGTTATAATAGCTGGGAAAAAAGAATCAGTGACTTTGGCTTTGCAAAGAGCAGATAGATTTCGCACCGATCTTGTTAGGCGTGGTGTTTTGTTAGTTCCTGTCATCTGGGGAGAAGGTAGAAAAACCAAAATTGAAAAGAAAGGTTTTGGCCTTCGACCAAAGGCGGCCGAGGCACTTCCATCCATTGGGGAAGATTTTGAGAAGCGGACACAGTCCATAACTGCACAATCAAAACTGAAAGCTGAAGTTAGGTTCAAGGCTGAGGTTGTATCGCCAGCCGAATGGGAACGGTGGATAAGAGATCAGCAGAAGTCTGAAGGAGTTCCTGTTGGCGAAGACGTGTACATAATACTGCGCCTAGACGGGCGAGTTCGAAGATCGGGGAAAGGTATACCTGACTGGCAGCAAATTGCGCTTGAGCTTCCGCCAATGGATGCAATTTTAAGCAAACTGGAAAGATGA 1329 0.4402 MAMLAAQPFLFFSSQSNSRISRPCLPLPQLSSIHLRSRNSKIQFPLISCSSSQTPETQTQTQTAESCVNLGLQLFSKGKVKGALTQFETALSLNPNPLEAQAAFYNKACCHAYRGEGKKAAECLRTALRDYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGSSFRRDLKLISEVQAPFRGIRRFFYVAFTASAGISLFFNVPRILRVIQGGDGAPDLLETAGNAAVNIGGIVVFVALFLWENKKEEEQLAQISRNETLSRLPLRLSSKRVVELVQLRDTVRPVIIAGKKESVTLALQRADRFRTDLVRRGVLLVPVIWGEGRKTKIEKKGFGLRPKAAEALPSIGEDFEKRTQSITAQSKLKAEVRFKAEVVSPAEWERWIRDQQKSEGVPVGEDVYIILRLDGRVRRSGKGIPDWQQIALELPPMDAILSKLER 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03484 442 Gene3D Tetratricopeptide repeat domain 48 150 IPR011990 GO:0005515
Vifa5g03484 442 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 49 157 - -
Vifa5g03484 442 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 21 440 - -
Vifa5g03484 442 SUPERFAMILY TPR-like 60 130 IPR011990 GO:0005515
Vifa5g03484 442 ProSiteProfiles TPR repeat profile. 64 97 IPR019734 GO:0005515
Vifa5g03484 442 SMART tpr_5 64 97 IPR019734 GO:0005515
Vifa5g03484 442 Pfam Low psii accumulation1 / Rep27 172 249 IPR021883 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03484 - - gmx:100784188 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03484 5 1143168524 1143171170 Vifa5g03484 5 1143168524 1143171170 ECH