Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03476 ATGAATGGCATGGGTGTCTTCACAGATAGAGTCGTAACGGTGCTAAAAACTTTTTGCCGTTCTCAAAGTCACGTTAAACAAATTCAAGCCCAAATCATAGTTCACAACCTTCAGTCAAACACCACAATCGCATACAACTTCATCACCGCGTCTCAATCTCACAATCTTCTCATCTCAGTTCTACCTCTCTTCACTCTCCTCATTCCAAAACCCCATCTTTTCATCTTCAACTCTCTCATCAGAGCTTTCTCCCATTCCCACATCCCCAACACCCCTCTCTCTTTATACTCCCACATGCACAAAAACTCAATCCACCCCAACTATTTCACGTTCCCTTTCCTCTTTAAGTCACTTTCCGACTCGCGTTGTTTCGTTCAGTCCCAATGTGTGTACACCCATGTTGTGAAACTTGGTTATGGTAACGATGTTTATGTTAGTAACTCGCTTCTTGATGTGTATGCGTCGTGTGGCTATGTTCAACTTTGTCGGCAACTGTTTGATGAAATGCCGCACAGAGATGTTGTGTCTTGGACTGTTTTGATTATGGGTTATCGGTTTAGTGGGAGGTTTGATGATGCGTTGCTTGTGTTTGAACAGATGCAGTATGCGGGTGTGGTTCCGAATCGGGTTACCATGGTGAATGCGTTGGCTGCTTGTGCTAGCTCTGGTTCTATTGAAATGGGGATTTGGATACATGATATGATAAACAGAAATGGGTGGGAACTGGATGTGATTTTGGGGACGGCGTTGATTGATATGTATGTGAAATGTGGGAGAGTGGGAGATGGGTTGAGAGTTTTTAATTATATGAAGGAGAGGAATGTGTTTACTTGGAATGCTGTTATTAAAGGGCTAGCTTTGGCTAAGAGTGGTGAGGAGGCGATTTTGTGGTTTAATAGGATGGAGTTTGGTGGAGTTAGAGCTGATGAAGTTACTTTGGTTGCGATTCTTTCAGCGTGTAGTCATTCGGGTTTGGTGGATAAGGGTCGATTGATATTTAGTATGTTGGTTGATGGGAAGTATGGATTTTGTCCTAATGTTAAACATTATGCTTGTATGGTTGATCTCTTGGCACGTGCTGGTCAATTGCAAGAGGCTTTTGAGATCATGAGATGTATGCCTTTTGAGCCGACAAAAGCTATGTGGGGATCGTTGTTGATTGGTTCAAAATCTCAGGGGAACTTTGAGTTCAGCGAGTTTGTTGCTAGGAAGCTAGTTGAGATGGAGCCGGATAACACTGCCTATTATGTTCAGCTGTCAAATCTATATGCAGAGTCGGGAAGATGGAGCGATGTTGAGAGAGTAAGGGGAATGATGAAAGAGAGAGATCTGATTAAGGACTTGGGTTGTAGTTCTGTGGAGGTTGAACACCAAAGGCCTGCCGGTGAAGTTTTGGCAATGTAA 1404 0.433 MNGMGVFTDRVVTVLKTFCRSQSHVKQIQAQIIVHNLQSNTTIAYNFITASQSHNLLISVLPLFTLLIPKPHLFIFNSLIRAFSHSHIPNTPLSLYSHMHKNSIHPNYFTFPFLFKSLSDSRCFVQSQCVYTHVVKLGYGNDVYVSNSLLDVYASCGYVQLCRQLFDEMPHRDVVSWTVLIMGYRFSGRFDDALLVFEQMQYAGVVPNRVTMVNALAACASSGSIEMGIWIHDMINRNGWELDVILGTALIDMYVKCGRVGDGLRVFNYMKERNVFTWNAVIKGLALAKSGEEAILWFNRMEFGGVRADEVTLVAILSACSHSGLVDKGRLIFSMLVDGKYGFCPNVKHYACMVDLLARAGQLQEAFEIMRCMPFEPTKAMWGSLLIGSKSQGNFEFSEFVARKLVEMEPDNTAYYVQLSNLYAESGRWSDVERVRGMMKERDLIKDLGCSSVEVEHQRPAGEVLAM 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03476 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 273 IPR002885 -
Vifa5g03476 467 FunFam Pentatricopeptide repeat-containing protein At1g50270 107 227 - -
Vifa5g03476 467 Gene3D Tetratricopeptide repeat domain 341 461 IPR011990 GO:0005515
Vifa5g03476 467 Gene3D Tetratricopeptide repeat domain 226 340 IPR011990 GO:0005515
Vifa5g03476 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vifa5g03476 467 Pfam PPR repeat family 172 219 IPR002885 -
Vifa5g03476 467 Pfam PPR repeat family 273 321 IPR002885 -
Vifa5g03476 467 FunFam Pentatricopeptide (PPR) repeat protein-like 252 457 - -
Vifa5g03476 467 NCBIfam pentatricopeptide repeat 175 208 IPR002885 -
Vifa5g03476 467 NCBIfam pentatricopeptide repeat 276 309 IPR002885 -
Vifa5g03476 467 NCBIfam pentatricopeptide repeat 248 275 IPR002885 -
Vifa5g03476 467 Pfam E motif 394 454 IPR046848 -
Vifa5g03476 467 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 172 458 IPR046960 GO:0003723|GO:0009451
Vifa5g03476 467 Pfam PPR repeat 350 373 IPR002885 -
Vifa5g03476 467 Gene3D Tetratricopeptide repeat domain 126 225 IPR011990 GO:0005515
Vifa5g03476 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03476 Vifa-Chr5 1142103991 1142105394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03476 87 455 Glycoside Hydrolase AT3G49170 35.829 4.83e-69 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03476 - - lja:Lj0g3v0239469.1 699.123