Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03446 ATGCTTCATCAAACCTCCATCACCGTTCTCAACCGCTTCTTCCATCACCAACCACACTCCCTCTTCACAAAACCAATCTCCCGATTCCCTTTCTCACTCCCCATCATTCTATCCATGTCAACATCTCACTCCTCCTCCAACCAACACAACTTCACCAATCGACTTGCTTCCGAACAAAGCCCTTATCTTCTTCAACACGCTCATAACCCTGTTGATTGGTATCCATGGGGAGAACATGCTTTCGCCGAGGCTCGCCGTCGAGATGCACCTATCTTCTTATCAATTGGGTACAGCACTTGTCATTGGTGTCATGTTATGGAGGTTGAGTCTTTTGAGGATGAGGGGATTGCGAAATTGTTGAATGATGGGTTTGTTAGCATTAAGGTGGATCGTGAGGAGCGGCCAGATGTTGATAAGGTATACATGACGTATGTGCAGGCTTTGTATGGCGGAGGAGGTTGGCCTCTAACTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTTCCCCCTGATGATAAATATGGCCGACCTGGATTTAAGACTGTACTCAGAAAGGTAAAAGAGGCTTGGGAAAGTAAGAGGGATATGCTAGTTAAGAGTGGAACATTTGCAATTGAACAGCTTTCTGAGGCATTGTCTACTAGTTCAGATTCTGGTAAATTGCCTGATGGTGTTTCTGACGAGGCATTACGTCTATGCTCAGAGCAGCTCTCTGAGAACTATGATTCAGAGTTCGGTGGTTTTGGATCTGCTCCAAAATTTCCAAGACCGGTTGAGATCAACTTGATGTTTTACAACTCTAAAAAGTTGGAGGATACCGGAAAGTTAGATAGAGCTAAGGAAAGTCAGAAAATGGTTTTCGTTACATTACAATGCATGGCAAAAGGAGGTGTCCACGATCATGTTGGAGGGGGGTTTCACAGATATAGCGTGGATGAATGCTGGCATGTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATTTAGATGCTTTTTCTATCACAAAAGATACCTTCTATTCATCTATATCACGGGATATCCTAGACTATTTGAGGAGAGACATGATTGGTCCAGAAGGTGAAATATTTTCAGCAGAGGATGCTGACAGTGCAGAGACCGAAGGGGCTACACATAAAAAAGAAGGATCCTTCTACATATGGACCAGCGAAGAGGTTGAAGACATACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTACATAAAGAAGATGGGTAACTGTGACTTATCTGAAATGAGTGATCCTCACCAAGAATTCAAGGGAAAGAATGTCCTGATTGAGAGGAAGGATCCTTCAGAAATTGCATCAAAATATGGTATGTCAGTTGAGACATATCAAGAAATTCTCGGAGAATGCAGGCGTAAGTTGTTTGAAGTAAGATTGAAGCGCCCCAAGCCACATTTGGATGATAAGGTTATTGTATCTTGGAATGGACTGGCAATCTCATCTTTTGCTAGGGCTTCTAAGATTCTAAAGGGTGAAGCTGAAGGGATCAAATTCAACTTTCCTGTTGTTGGCACTCAACCAAAGGAGTACTTGAGAATAGCAGATAAAGCAGCATCCTTCATTAGGAATCACCTTTACAATGAAGAGACTTGCAGACTACAACACAGTTTCAGAAACTCTCCATCTAAAGCTCCCGGTTTCTTGGATGATTATGCTTTTTTGATTTCTGGATTGCTGGATCTCTACGAATTCGGAGGTGGAATCAACTGGCTTTTATGGGCCATTGAATTGCAGGAAACCCAGGATTCTTTGTTTCTTGATAAGGACGGAGGCGGATATTTCAATAATACAGGAGAAGATTCTTCAGTTCTTCTCCGTGTAAAGGAAGACCACGACGGGGCTGAACCGTCGGGGAACTCTGTCTCCACAATAAATCTTATAAGGTTGGCTTCCATGGTTTCTGGAAGTAAGGCAGATTATTATAAGCGAAACGCAGAACATCTTTTGGCAGTTTTTGAGAAGAGATTGAGAGATATGGCCATGGCAGTGCCTTTAATGTGTTGTGCTACAGACATGCTGCGTGTCCCTTCCCGGAAGCAAGTGGTGGTAGTTGGCGAAAGGACTTCCGAGGAATTTGAAAACATGCTTGCTGCAGCTCACACATTATATGATCCCAACAGAACAGTTATTCATATAGATCCCAACAAGAAAGAAGATATGGAATTTTGGGAAGTAAATAACAGCAATATTGCTCTAATGGCTAAGAATAACTCTGCAGTTGACAAGGTTGTAGCTCTTGTATGTCAAAACTTCACATGTAGTGCCCCTGTGACAGATAGTTCATCACTTGAAGCTTTGCTCTCCCAAAAATTCTCTTAG 2382 0.4257 MLHQTSITVLNRFFHHQPHSLFTKPISRFPFSLPIILSMSTSHSSSNQHNFTNRLASEQSPYLLQHAHNPVDWYPWGEHAFAEARRRDAPIFLSIGYSTCHWCHVMEVESFEDEGIAKLLNDGFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLTVFLSPDLKPLMGGTYFPPDDKYGRPGFKTVLRKVKEAWESKRDMLVKSGTFAIEQLSEALSTSSDSGKLPDGVSDEALRLCSEQLSENYDSEFGGFGSAPKFPRPVEINLMFYNSKKLEDTGKLDRAKESQKMVFVTLQCMAKGGVHDHVGGGFHRYSVDECWHVPHFEKMLYDQGQLANVYLDAFSITKDTFYSSISRDILDYLRRDMIGPEGEIFSAEDADSAETEGATHKKEGSFYIWTSEEVEDILGEHAALFEEHYYIKKMGNCDLSEMSDPHQEFKGKNVLIERKDPSEIASKYGMSVETYQEILGECRRKLFEVRLKRPKPHLDDKVIVSWNGLAISSFARASKILKGEAEGIKFNFPVVGTQPKEYLRIADKAASFIRNHLYNEETCRLQHSFRNSPSKAPGFLDDYAFLISGLLDLYEFGGGINWLLWAIELQETQDSLFLDKDGGGYFNNTGEDSSVLLRVKEDHDGAEPSGNSVSTINLIRLASMVSGSKADYYKRNAEHLLAVFEKRLRDMAMAVPLMCCATDMLRVPSRKQVVVVGERTSEEFENMLAAAHTLYDPNRTVIHIDPNKKEDMEFWEVNNSNIALMAKNNSAVDKVVALVCQNFTCSAPVTDSSSLEALLSQKFS 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03446 793 CDD SSP411 74 196 IPR004879 -
Vifa5g03446 793 FunFam spermatogenesis-associated protein 20 50 222 - -
Vifa5g03446 793 PANTHER SPERMATOGENESIS-ASSOCIATED PROTEIN 20 40 791 IPR024705 -
Vifa5g03446 793 SUPERFAMILY Six-hairpin glycosidases 240 635 IPR008928 GO:0005975
Vifa5g03446 793 Pfam Protein of unknown function, DUF255 52 212 IPR004879 -
Vifa5g03446 793 SUPERFAMILY Thioredoxin-like 51 179 IPR036249 -
Vifa5g03446 793 PIRSF UCP006402_thioredoxin 38 793 IPR024705 -
Vifa5g03446 793 Gene3D Glutaredoxin 51 222 - -
Vifa5g03446 793 Gene3D - 523 702 IPR012341 GO:0005975
Vifa5g03446 793 FunFam spermatogenesis-associated protein 20 523 700 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03446 - - gmx:100777751 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03446 5 1131731344 1131737086 Vifa5g03446 5 1131731344 1131737086 ECH