Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03440 ATGGGAGTTGTAACTCTTGGCGAATTGAAGCCCAGTGTTTCAGGAAAAAGAACCTTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGCCAATTTCTGATGTTTCTAGTGATCTTACTATTCAAGTAGGAGCATCAACTTTTTCACTTCACAAGTTTCCTCTTGTTTCTAGGAGTGGAAGATTCAGGAAACTACTACTAGATGTAAAAGATTCGAAAGTTTCGCGCGTAAGTTTTCCGGCTGTACCAGGTGGTGTAGAGGCATTTGAACTAGCTGCAAAATTCTGTTATGGAATCAATGTTGATTTCAATCTCTCAAATATTGCTATGATACATTGCACATCTCATTTTCTCGAAATGACAGAAGAATTCTCAGAAAAGAATTTGGTGACACGAGCCGAATCGTATCTAAAGGAAATAGTACTCCCAAACACATCAAGCATTATAAATGTTCTTCACCATTGCGAGAATCTTGTTCCTTTATCCGAAGAAATAAATCTGGTTAATAGGCTCATCAACGCGATTGCGAATAATGCGTGCAAAGAGCAACTTACATCTGGTTTGTTGAAACTTGATCATAATTTTCCTTCTAAGGCAGCATCAATAATGGAACCAGAAACACCTCTAGATTGGTGGGGGAACTCGATGAATGTTCTTAGTCTCGAATTCTTCGAACGAGTTGTATCCGTTATGAAGTCGAAGGGACTAAAACAAGACTTGATCAGCAAGATTTTGGTAAACTATGCACATAATTCTCTTCAAGGGACTAGTACTGTTAGTTCCCTTGACGTAGAATCACAGAAGAAACAAAAGGTTATTGTCGAAACTATAGTTCGGTTACTACCAACTCAATCAAGGAAAAGCTCAGTTCCAATCGCATTTCTATCGTGTTTATTGAAAACCGCGATAGCAACAATGGTTCCAACTTCTTGTAGAAGTGATTTGGAGAGGCGAATCGGTCTACAGCTCGATCAGGCGATACTCGAAGACATTCTTATTCCAACGAACTCGCCTTTGAGTACTCACAACACAATGTATGATATAGATTCGATTTTGAGGATCTTTTCTACTTTCCTAAACTTGGATGAAGTGGATGACCAAGATAGTGATTTCAGAGATGAAAATCAAATGATGTATGAGTACGAATTCGACAGTCCTGGATCTCCCAAACAAAGTTCAATTCTTAAAGTATCCAAATTAATGGATAATTTTCTTACTGAAGTTGCACTAGACTCCAACCTTTTGCCATCAAAATTCATAGCCCTTGCTGAACTACTTCCTGATCATGCTCGCGTTACAAGCGATGGACTCTATCGAGCGGTTGATATCTTCCTTAAGGTTCATTCGAACATTAAGGACTCAGAGCGATACCGTCTAAGCAAAACAATCGATTGTCAGAAACTATCTCAAGAAGCATGCAGCCATGCAGCACAAAACGAAAGACTCCCGGTACAAATAGGCGTACAAGTTCTTTACTACGAACAAATAAGGCTTCGAAACGCGATGAACGGAGGGCACAATCAAATCATGTTTGGTGGAAATCATGGCCAGTTTCCTCAAAGATCAGGAAGTGGTATAGGAAGTGGAGCAATATCACCAAGAGACAACTACGCATCAGTGAGACGAGAGAATCGAGAGTTGAAGCTTGAAGTAACAAGAATGAGAATGAGGTTGAACGATTTGGAGAAAGACCATGTTTCTATGAAACAAGAGCTTGTGAAAACAGGTCCTGCGCAGAGATTTTTCAAGTCATTTGCTAAGAAACTAAGCAAATTTAATGCTTTGTTTCGTATAAATAGTATTCGCGGGAGTGGAACTGCAAGGTCTGGTTCACAAACTCGGTCTCGGTTTCCTTTTCAAAGGCGAAAGTGTCACTCAGTTTCATGA 1890 0.3974 MGVVTLGELKPSVSGKRTFRPSSSIRHATEWPISDVSSDLTIQVGASTFSLHKFPLVSRSGRFRKLLLDVKDSKVSRVSFPAVPGGVEAFELAAKFCYGINVDFNLSNIAMIHCTSHFLEMTEEFSEKNLVTRAESYLKEIVLPNTSSIINVLHHCENLVPLSEEINLVNRLINAIANNACKEQLTSGLLKLDHNFPSKAASIMEPETPLDWWGNSMNVLSLEFFERVVSVMKSKGLKQDLISKILVNYAHNSLQGTSTVSSLDVESQKKQKVIVETIVRLLPTQSRKSSVPIAFLSCLLKTAIATMVPTSCRSDLERRIGLQLDQAILEDILIPTNSPLSTHNTMYDIDSILRIFSTFLNLDEVDDQDSDFRDENQMMYEYEFDSPGSPKQSSILKVSKLMDNFLTEVALDSNLLPSKFIALAELLPDHARVTSDGLYRAVDIFLKVHSNIKDSERYRLSKTIDCQKLSQEACSHAAQNERLPVQIGVQVLYYEQIRLRNAMNGGHNQIMFGGNHGQFPQRSGSGIGSGAISPRDNYASVRRENRELKLEVTRMRMRLNDLEKDHVSMKQELVKTGPAQRFFKSFAKKLSKFNALFRINSIRGSGTARSGSQTRSRFPFQRRKCHSVS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03440 629 SUPERFAMILY POZ domain 22 123 IPR011333 -
Vifa5g03440 629 SMART BTB_4 38 130 IPR000210 GO:0005515
Vifa5g03440 629 MobiDBLite consensus disorder prediction 604 618 - -
Vifa5g03440 629 MobiDBLite consensus disorder prediction 604 629 - -
Vifa5g03440 629 FunFam BTB/POZ domain-containing protein At1g03010 17 134 - -
Vifa5g03440 629 PANTHER OS12G0117600 PROTEIN 34 590 IPR043454 -
Vifa5g03440 629 Gene3D Potassium Channel Kv1.1; Chain A 18 166 IPR011333 -
Vifa5g03440 629 ProSiteProfiles NPH3 domain profile. 211 498 IPR027356 -
Vifa5g03440 629 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Vifa5g03440 629 Pfam BTB/POZ domain 37 138 IPR000210 GO:0005515
Vifa5g03440 629 Coils Coil 538 572 - -
Vifa5g03440 629 Pfam NPH3 family 211 474 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03440 Vifa-Chr5 1131162248 1131165079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03440 1 448 EF-hand Containing Proteins AT2G47860 57.950 4.69e-180 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03440 - - zju:107426026 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03440 5 1131162248 1131165079 Vifa5g03440 5 1131162248 1131165079 ECH