Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03426 ATGCAGAAAATGACGATTCGTTTCCCTGAGGAAGTTCTCGAGCGGCGGATTTTCGTTGGAAACTGCTACGCCGTGAGTCCTTCAACGGTGACGAAACGGTTTCCCGAGCTGAGATCCGTTTCGCTGAAAGGGAAACCGCACTTTGCGGACTTCAATTTGGTGCCGGAAGGATGGGGAGGTTATGTTAGTCCGTGGATCGCGGCTATGGCGTATGGTTTGCCGTTGCTGGAAGAGATTCGGCTCAAGAGGATGGTTATTACGGATGAGAGCTTGGAGCTTATTGCTAAGTCGTTTAAGAATTTTAAGGTTTTGGTGCTTATTTCGTGTGAGGGGTTTACGACGGATGGACTTGCTGCCATTGCTTCTAATTGCAGGAATTTGAAGGAATTGAACTTGCAGGAGAGTGAACTGGAGGACCTTAGTGGGCATTGGCTAAGCCAATTCCCTGATTCTTACACATCATTAGTTTCACTTAACATCTCTTGCTTGAACAATGAGCTTGCTGAGTTAGGCACAGGAGTCTACTCAGCTGAGATGCGTCCAGAGGTCTTCTCAAACCTAGTAACAGCATTTTCTGGGTGCAAGCAAATGAAGAGCTTGTCTGGTTTTTGGCAAGTTCTGCCATCCTACCTTCCGGCACTAAATCCAGTCTGCTCTAGGCTAACATCACTAAACTTGAGTTATGCTGTCATTCAAAGCTCTGATCTTATCAAGCTTGTCGGTCAATGCCCCAATTTGTTGCGGTTATGGGTGCTTGATTACATAGAAGATGCTGGTCTTGATGTCGTTGCTGCTTCATGCAAGGATCTACAGGAGTTGAGGGTGTTTCCCTCTGATCCATTTGGTTTAGAACCAAATATTGCGTTGACAGAACAGGGTCTTGTCTCTAGTAGGCCTAATTTGACTCGCTTTCGCCTGTGTATTCTGGAGCCTCGAACTCCTGACTATCTTACCCTTCAACCACTAGATTCTGGTTTTGGAGCTATTGTAGAGCATTGTAAGGATCTTCGGCGCCTTTCCCTTTCCGGCCTTCTTACTGATCGTGTTTTTGAGTATATTGGAGCTCATGCAAAGAAGCTGGAGATGCTATCCGTTGCCTTTGCCGGAGATAGCGATTTGGGTCTCCATTATATGCTGTCTGGGTGTGATAATCTTAGGAAGCTTGAGATCAGGGACTGCCCCTTCGGCGACAAGGCTCTTTTGGCCAATGCGGCAAAACTCGAGACAATGCGATCCCTTTGGATGTCCTCTTGCCCAGTGAGTTATGGAGCGTGTAAGCTACTGGGTCAGCAAATGCCCAGACTTAATGTTGAAGTCATTGATGAAAGAGGAACTCCAGATTCAAGGCCGGATAGCTGTGCTGTGGAGAAGCTTTATATATACAGAAGTACTGCTGGGCCAAGGTTGGACATGCCTGGTTTTGTCTGGACAATGGAAGATGATTCCGTCCTTCAGCTCGAGCAACCTAGCAGTGTATAG 1479 0.4699 MQKMTIRFPEEVLERRIFVGNCYAVSPSTVTKRFPELRSVSLKGKPHFADFNLVPEGWGGYVSPWIAAMAYGLPLLEEIRLKRMVITDESLELIAKSFKNFKVLVLISCEGFTTDGLAAIASNCRNLKELNLQESELEDLSGHWLSQFPDSYTSLVSLNISCLNNELAELGTGVYSAEMRPEVFSNLVTAFSGCKQMKSLSGFWQVLPSYLPALNPVCSRLTSLNLSYAVIQSSDLIKLVGQCPNLLRLWVLDYIEDAGLDVVAASCKDLQELRVFPSDPFGLEPNIALTEQGLVSSRPNLTRFRLCILEPRTPDYLTLQPLDSGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGAHAKKLEMLSVAFAGDSDLGLHYMLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCPVSYGACKLLGQQMPRLNVEVIDERGTPDSRPDSCAVEKLYIYRSTAGPRLDMPGFVWTMEDDSVLQLEQPSSV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03426 492 SMART LRR_CC_2 333 356 IPR006553 -
Vifa5g03426 492 SMART LRR_CC_2 73 97 IPR006553 -
Vifa5g03426 492 SMART LRR_CC_2 218 242 IPR006553 -
Vifa5g03426 492 SMART LRR_CC_2 382 406 IPR006553 -
Vifa5g03426 492 SMART LRR_CC_2 98 123 IPR006553 -
Vifa5g03426 492 SUPERFAMILY RNI-like 39 436 - -
Vifa5g03426 492 Pfam Transport inhibitor response 1 protein domain 35 81 IPR041101 -
Vifa5g03426 492 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 56 438 - -
Vifa5g03426 492 Gene3D Ribonuclease Inhibitor 15 478 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03426 Vifa-Chr5 1125246863 1125250009 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03426 K14485 - gmx:100816241 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03426 5 1125246863 1125250009 Vifa5g03426 5 1125246863 1125250009 ECH