Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03421 ATGAAGAAAGAGAATGAAACAGTGATCATTGTTGGAGCAGGCCCTTCTGGTCTCTCAGTCGCAGCATCCTTAACAAACCAATCCATTCCCTACATAATCCTCGAGAGAGAAAACTGTTTTGCATCTCTATGGAAAAAATATTCCTACGATCGTCTTCATCTTCACCTCAAAAAGCAATTCTGCGAGCTTCCGCACAAACCGTTTCCATCTTCTTATCCATCATACATTTCTAAGGAAGAGTTTTTGCAGTATTTAGAAGACTACGTTTGTCACTTCAAGATCAATCCTGTTTATCACAGGACAGTGGAGTATGCGGAGTTTGATGAAGGTTGTGAGAAATGGAAGGTGAAGGCTATGAATAAGGATTCTGGTGAAGTTGAGGAGTATGGTGGGAGGTTTTTGGTTGTGGCTAGTGGTGAAACTAGTGACCCTTTTGTTCCTGAGATTGAAGGGTTGAACACTTTTGCTGGGAAACTCATTCATTCTACTGGGTTTAAGAATGGGAAAGAGTTTAAGGATGAACATGTTCTTGTTGTTGGTGCTGGGAATTCTGGTATGGAAATTGCATTGGATCTTGTCAACCATGGTGCTAAAACTTCAATTCTTGTTCGAAGCCCGCATATTTTGCAGGTTCATATATTGTCAAAGGGAATGGTGAACTTAGGGTTGTTTTTGATGAAGTATTTGTCAATGGAGATGGTGGATTCATTAATGGTGATGCTTAGTAAAATGGTTTATGGTGATGTGACTAATTATGGGGTTGGTAGGCCTAATGAGGGACCTTTTTACATGAAAGTTAAATACGGCAAGTATCCAATTATTGATGTTGGTACCTGTGAGAAAATTAAATCTAAAGAGTTAAAGGTGTTGCCAGCTGAAATAGAAAGCTTAAGTGGCAAGAATGTGTTATTCAAGAATGGTGAATTGTATACTTTTGACTCTATTATTTTCTGCACGGGCTTCAAGAGATCAACACATAAATGGCTTAAGGGAGATGATTATCTTTTGAGTGATGATGGTATTCCAAAGCAAAGTTACCCTTTTCATTGGAAGGGGAAGAATGGTTTGTATTGTGTTGGATTATCAAGGAGAGGTTTATATGGAGCTGCTCAAGATGCTGAAAATGTAGCAAATGATGTTAAATCCATCATGCAAAAAGTTATATGA 1167 0.3847 MKKENETVIIVGAGPSGLSVAASLTNQSIPYIILERENCFASLWKKYSYDRLHLHLKKQFCELPHKPFPSSYPSYISKEEFLQYLEDYVCHFKINPVYHRTVEYAEFDEGCEKWKVKAMNKDSGEVEEYGGRFLVVASGETSDPFVPEIEGLNTFAGKLIHSTGFKNGKEFKDEHVLVVGAGNSGMEIALDLVNHGAKTSILVRSPHILQVHILSKGMVNLGLFLMKYLSMEMVDSLMVMLSKMVYGDVTNYGVGRPNEGPFYMKVKYGKYPIIDVGTCEKIKSKELKVLPAEIESLSGKNVLFKNGELYTFDSIIFCTGFKRSTHKWLKGDDYLLSDDGIPKQSYPFHWKGKNGLYCVGLSRRGLYGAAQDAENVANDVKSIMQKVI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03421 388 PIRSF FMO 4 365 IPR000960 GO:0050660|GO:0050661
Vifa5g03421 388 Pfam Pyridine nucleotide-disulphide oxidoreductase 9 209 - -
Vifa5g03421 388 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 6 384 - -
Vifa5g03421 388 PRINTS Pyridine nucleotide disulphide reductase class-II signature 171 195 - -
Vifa5g03421 388 PRINTS Pyridine nucleotide disulphide reductase class-II signature 7 29 - -
Vifa5g03421 388 SUPERFAMILY FAD/NAD(P)-binding domain 4 211 IPR036188 -
Vifa5g03421 388 SUPERFAMILY FAD/NAD(P)-binding domain 175 382 IPR036188 -
Vifa5g03421 388 Gene3D - 1 387 IPR036188 -
Vifa5g03421 388 PRINTS FAD-dependent pyridine nucleotide reductase signature 175 193 - -
Vifa5g03421 388 PRINTS FAD-dependent pyridine nucleotide reductase signature 8 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03421 Vifa-Chr5 1122401499 1122403192 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03421 K11816 - gmx:102668138 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03421 5 1122401499 1122403192 Vifa5g03421 5 1122401499 1122403192 ECH