Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03419 ATGATGTTAAGAATTTGCTTAAGAAAAAATATTCCTTATGCAAGGCCTTTGTTTACTGAGAGTTTCTATAGGTTATTGTCTACTCGGCCCGAAAGGAAGTTACAAGACAAGGTGGCACTGATAACTGGAGGAGCTAGTGGAATAGGAAGAGCAGCCGCAACAACATTCATTAATAATGGAGCGAAAGTAATTATTGCCGATATCGACCAACAACATGGCCGAGAGACTGTGAAAGAATTAGGACCTAATGCAACTTTCGTAACATGCGATGTCACGAAAGAATCAGACATATCGAGTGCGGTGGATTTTGCAGTTTCTGAATACAAACAACTTGATATCATGTATAACAATGCAGGAATACCCTGCAAAACTCCTCCAAGCATTGTTGATCTTGATCTAGAGTCGTTTGATAAAGTCATGGACATTAATGTTCGCGGCGTTATGGTTGGGATCAAGCATGCTGCACGCGTGATGATCCCGCGCGGAACTGGATCCATTCTATGTACTGCTAGTGTCACTGGTGTGATAGGAGGGATGGCGCAGCATACTTACTCGGTATCAAAGTTTGCGGTTATAGGCATTGTTAAATCTTTAGCTTCAGAGCTATGTAGGCATGGGATCCGAATCAATTGCATTTCGCCTATTGCCATACCTACTCCTTTCGTCATGAACGAAATGAATCAGATATATCCGCATCTTGAGTCTGAACGACTTGTAGAAATTGTTCGTAATGTTGGTGTACTAAAAGGAGCTAATTGTGAACCGAGCGATATTGCTAATGCTGCGCTTTACCTTGCATCGGATGATGCTAGGTATGTTAATGGACATAATTTAGTTGTGGATGGAGGTTTCACATCTTTTAAGAGTTTAGAGTTTCCTGCACCAGATCAAGTGCAGTAG 900 0.4167 MMLRICLRKNIPYARPLFTESFYRLLSTRPERKLQDKVALITGGASGIGRAAATTFINNGAKVIIADIDQQHGRETVKELGPNATFVTCDVTKESDISSAVDFAVSEYKQLDIMYNNAGIPCKTPPSIVDLDLESFDKVMDINVRGVMVGIKHAARVMIPRGTGSILCTASVTGVIGGMAQHTYSVSKFAVIGIVKSLASELCRHGIRINCISPIAIPTPFVMNEMNQIYPHLESERLVEIVRNVGVLKGANCEPSDIANAALYLASDDARYVNGHNLVVDGGFTSFKSLEFPAPDQVQ 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03419 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 285 IPR036291 -
Vifa5g03419 299 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 31 288 - -
Vifa5g03419 299 FunFam Short-chain dehydrogenase reductase 26 289 - -
Vifa5g03419 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 172 IPR002347 -
Vifa5g03419 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 109 120 IPR002347 -
Vifa5g03419 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 184 203 IPR002347 -
Vifa5g03419 299 PRINTS Glucose/ribitol dehydrogenase family signature 248 268 IPR002347 -
Vifa5g03419 299 PRINTS Glucose/ribitol dehydrogenase family signature 205 222 IPR002347 -
Vifa5g03419 299 PRINTS Glucose/ribitol dehydrogenase family signature 158 174 IPR002347 -
Vifa5g03419 299 PRINTS Glucose/ribitol dehydrogenase family signature 184 203 IPR002347 -
Vifa5g03419 299 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Vifa5g03419 299 PRINTS Glucose/ribitol dehydrogenase family signature 109 120 IPR002347 -
Vifa5g03419 299 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 171 199 IPR020904 GO:0016491
Vifa5g03419 299 Pfam Enoyl-(Acyl carrier protein) reductase 43 285 - -
Vifa5g03419 299 Gene3D - 26 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03419 Vifa-Chr5 1122375462 1122376690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03419 14 284 Acyl Lipid Metabolism Gene Families AT1G24360 26.056 4.16e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03419 - - gmx:100814306 468.003