Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03418 ATGACGAACACTAAACCTTCATCTGCACTTGATGGAGATGGAGTCAAAGACGCGAATGGGTTTGAAAAGTATCAGGAAACTGAGCTTTTTGAGGATACTTTAGTTATTCATAGTCTTGTCACAGAAACTGAGGTGGAAATGCTCAATCTGAATGATACTGAGATGGTAGAGGATTCGGAGCCTGAGAATTTGACAATTGATGCGAAGTGTGAGTATGAGACAGAAGTGGTGCTTGATAGCGAGGACGAAGAAATGAATAATGCAGGCAAAGTGACTGTTGGTGAAAACAGTTCAGCAGTAAGCAATTTGCCGGTGCTCTTCAAGAAAAGATTGTCTAAGATACTTTGTGAGCAAGCAAACTCAAAATCAAATGCAGTCACTTCTGGGAAATCTGGTACTGGGGACGAAACAGCTTCAATTAATGCTGAGAGCTTTGATGATAACAACCATCGATACCACTCACCAGAGCCTGAGGATTCAACCCTAGCTGCTCTAGGCTTTGTGGATCAGTACTTGTCATCACTAGACATGGACCTGTTTCAAGGAGTTCAAAATGGAAAGATCACTAGGGAGAAATCACCTCATGTCTCGAGTGCAAGAGGATCATTAAGTCTGGCTAAGAAACTTGCTCGAACTCAAAATGAAGATAACGACCTTTTCAAATGGGCTGAAAATGATCAAATTAAAAAAGAAGCTGGTGTTTTCAGTAAAAAAATCAATGCAGCTTTCAATTTCGGAAGCCACGGACTGACGTATAGGAGAAGAATACAAAAAAAAGGTAGTCATTCTCAGAACCAAGGAAAATGCGGTGCAAGTAATATATGTGGTGAGAATTTAGCTCGAGAACCAAGAATGGCAGCTGACAATAATAACTCTCTGAAGGAATTGGATATTGAGTCCTTTGCCCCAAGAGAGAATGTTGAAGTTTATTCTAATGAAGCACATACAGAAGACGATTATCATATTGGCTTAGACACTCAAATAGCTGCTGAAGCTATGGATGCCTTAGCCAATCTATCCCCTGCTGGCTTTCATTTCAGTGATGCTCACCAATCAGATAATGTGGCGGATGCATCTCTGAGTGATTTGAAACAAGCTCGTCCGAAAAATTCTCCATTTAAAGAGAATCCTGGATCACAGCCTTTTGCACTAAAATTCTACAAGAGAAACGTGTCTGCTAGTAGATTTAGAAAAGTAACTTATAATTCCTCATTCAAGCACAATAACAATCAGGAGGAGGGGATTATTAGACCTAAGAGGAAGGAAAATTGTTTAGCGGCGGCATATCCAGGGAAGATAAATGATGTTAAGAAAAAACGTCTTAATTTATTCACTAGTTTATATGGTGTGGCTAGGAAGAGCAGTTTGAACCATCAGGTTGAAGTTAGTCCACAACTATCTGCAACTAGCAGTTTTTCAAAGACTGGTTCTTGGGCTTATCCAAAAGGGCCAAGAGGCAAAAGAAAGCGAGCTAATGCTCCTAGAGTTTTGTATATCAATGATAAGGAAAACAATGTCTGTTCCACTAGAAGTCTAGAAAATCGCGATGATCTTAAGAAAAAACATATTAATTTATCTTCTTGTTCATATGGTGTGGCTAGAAAGAGTAGGTTGAACAATCAGGTTGAAGTTAGTCCACAACTATCTGCAACCATCAGTTTTTCAAAGATTGATTCTTGGACTTATCCAAAAGGATCAAGGGGGAAAAGAAAACGAGCTAATGCCCTAAATGTTGTGTGTATTGATGATAAAGAAAACAATGTATATTCCACTAAAAGTCTAGAAGTCCCAGATGATGTGCAAAAATCTCGTCTTCCCCCAGTTTCAGCTGGTGATGCTAAAAAATTTGAAAACCTGTGTGATATGCATCCCTTGTTGCTGGCACATGTTGGTGTATCATCAAACAAGTGTGTTTTACAGTCAAGTTCAGAAGTTTCAGCTTCAGTTCCAAGTGAAGGCATACAAATTTCCAATGGTAACCATACATGTAATGAGCACCGCAAAAAGGCATGTGAGAAAAAACTGCCAAAGTCTTCACTTTTGAAGGAACTTGTCAGATTAGGAGTTCCCAAATCCACGTCAGAAATGATGAGCAAAGATCCGAGACATCGAAGAGATATGACAAATGTTCGAGTTCTGCTTAGCCAACATTTGGATGGCAGTGTCCTCAAGCAACAACAGAAGATCTTGGCGCGTCTTAATGTATCTACTGTGTCAAGCTCAATGGAAGCCACTCATTTCATAGCAGACAAGTTCACACGAACAAAGAATATGCTAGAAACAATGGCTCTTGGGAACTTAGTATTGACACACTTATGGCTTGAGAGTTGTGGACAAGCCAACTGTTTTATCGATGAGAAAAATTATATTTTGAGAGATATGAAAAAGGAAAAAGAAATAGGATTTAGCATGCCAGTTTCTCTTGCTCGAGCAAGACAAAAGCCACTCCTGAAGGATATAAGTGTCTACGTAACACCACACGTCAAGCCCAATAAGGAGGTGGTTGCGAGCTTGGTTACAGCTGTTCATGGCCAGCTAGTGGATGAAAATCACATATTTACAGACAAGAATGATAATATCTTAGATGATCTGTTGATTCTTTCTTGTGAAGAAGACTTTGCAATATGCCGCCATTTCCTTGAGAGAGGAGCTTCTGTTTACAGTTCGGAGCTTGTTCTGAATGGAATTGTAATCCAGAAATTGGAACTCGAGAGGCATAAACTGTTTGTGAACCAAGTTTCAAAGAATAAACTAGGTAAATGTAATTGGTTTGGGAAGGTTTACAGAAGGGGTTTGAGGCCTTTATCTTGA 2811 0.3952 MTNTKPSSALDGDGVKDANGFEKYQETELFEDTLVIHSLVTETEVEMLNLNDTEMVEDSEPENLTIDAKCEYETEVVLDSEDEEMNNAGKVTVGENSSAVSNLPVLFKKRLSKILCEQANSKSNAVTSGKSGTGDETASINAESFDDNNHRYHSPEPEDSTLAALGFVDQYLSSLDMDLFQGVQNGKITREKSPHVSSARGSLSLAKKLARTQNEDNDLFKWAENDQIKKEAGVFSKKINAAFNFGSHGLTYRRRIQKKGSHSQNQGKCGASNICGENLAREPRMAADNNNSLKELDIESFAPRENVEVYSNEAHTEDDYHIGLDTQIAAEAMDALANLSPAGFHFSDAHQSDNVADASLSDLKQARPKNSPFKENPGSQPFALKFYKRNVSASRFRKVTYNSSFKHNNNQEEGIIRPKRKENCLAAAYPGKINDVKKKRLNLFTSLYGVARKSSLNHQVEVSPQLSATSSFSKTGSWAYPKGPRGKRKRANAPRVLYINDKENNVCSTRSLENRDDLKKKHINLSSCSYGVARKSRLNNQVEVSPQLSATISFSKIDSWTYPKGSRGKRKRANALNVVCIDDKENNVYSTKSLEVPDDVQKSRLPPVSAGDAKKFENLCDMHPLLLAHVGVSSNKCVLQSSSEVSASVPSEGIQISNGNHTCNEHRKKACEKKLPKSSLLKELVRLGVPKSTSEMMSKDPRHRRDMTNVRVLLSQHLDGSVLKQQQKILARLNVSTVSSSMEATHFIADKFTRTKNMLETMALGNLVLTHLWLESCGQANCFIDEKNYILRDMKKEKEIGFSMPVSLARARQKPLLKDISVYVTPHVKPNKEVVASLVTAVHGQLVDENHIFTDKNDNILDDLLILSCEEDFAICRHFLERGASVYSSELVLNGIVIQKLELERHKLFVNQVSKNKLGKCNWFGKVYRRGLRPLS 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03418 936 MobiDBLite consensus disorder prediction 122 141 - -
Vifa5g03418 936 ProSiteProfiles BRCT domain profile. 702 791 IPR001357 -
Vifa5g03418 936 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 86 908 - -
Vifa5g03418 936 CDD BRCT_PAXIP1_rpt6_like 816 902 - -
Vifa5g03418 936 Gene3D BRCT domain 697 814 IPR036420 -
Vifa5g03418 936 SUPERFAMILY BRCT domain 693 807 IPR036420 -
Vifa5g03418 936 CDD BRCT_MDC1_rpt1 721 784 - -
Vifa5g03418 936 Gene3D BRCT domain 815 916 IPR036420 -
Vifa5g03418 936 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 696 791 IPR001357 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03418 - K14972 gmx:102667761 911.753