Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03413 ATGAGAGGAGCAGTAGTGGTGAGTGGTGGATGCGGCAGTGGTGTGAAGGGGAGAAGAGGAGGGCGTGACAGCGGCGATGAAGTGTCGCCGGCGGCGCTAATGTTGGCTGCTTTGAAGAAATCAATGGTGGCTTGTAGTGTGGAGAGTCCTGACGATGTGATTTCGACTGTTCATCATCCTATGGAGATTGGATGGCCTACCAACGTTAAACATGTTAGCCATGTCACGTTTGATAGGTTTAATGGTTTTTTAGGTCTTCCTCTTGAACTTGAGGTTCATGTCCCTGTTCCTGTTCCTAGTGCTAGTGTTAGTGTGTTTGGTGTCTCAGCAGAATCAATGCAATGCTCTTATGATTCAAAAGGAAACAGTGTCCCCACTATTCTGCTACTGATGCAGGAAAGGTTATACTCACAGGGAGGATTGAAGGCTGAAGGAATATTTCGTATAAATCCTGAAAACGGCGAGGAGGAACATTTGAGGGAGCAATTGAATAGTGGCATTGTGCCCAAGGACATTGATGTTCATTGTTTGGCTGGTTTGATAAAAGCATGGTTTAGGGAACTTCCTTGTGGAGTTTTGGATGGACTTTCACCTGAGGAAGTTCTTGAATGCAACACAGAAGAAGAATCTGTTGAGCTTGTGAAGGAGCTGAAACCGGTTGAATCGGCTTTGCTTAGTTGGGCTATTGATCTCATGGCTGATGTTGTAGTCGAAGCTGAGTATAATAAAATGGATGCAAGAAATATTGCAATGGTTTTCGCTCCAAATATGACTCAAATGTCTGATCCATTAACGGCTCTTATGCACGCGGTCCAAGTGATGAATTTACTTAAAACACTGATATTGAAGACACTTCGAGATCGCGAAGAAACATCAACAGAAGAATATTCATCAATGTCATCTCATTCATCGGATCATCAATCAGAAGTAGATGACTATGACAGTCAACAAGACATGGATACTAATGGTGAATCCAAAAGAGCCAAGTTAGATTATGATGATCATGAGGACTACAGCCACAACATTGAAGAGGCAGCATCTAACTATAATGTGGAATCTGTTATATCAGTTACTGATACAAAAACTGAGGATTCTTGTTTGAGTTCCAGTTCTAGAGACGACTCGACAACAACTGAAGGATCGAATGATGATACAACAAGTAGTCCATCGATTGAAAGTAAAGAAACCAATGATGTGGAGATGGTAAATAAATGTGGTGATTGTGTTTCATCTAGCTAA 1239 0.4197 MRGAVVVSGGCGSGVKGRRGGRDSGDEVSPAALMLAALKKSMVACSVESPDDVISTVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPVPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENGEEEHLREQLNSGIVPKDIDVHCLAGLIKAWFRELPCGVLDGLSPEEVLECNTEEESVELVKELKPVESALLSWAIDLMADVVVEAEYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLRDREETSTEEYSSMSSHSSDHQSEVDDYDSQQDMDTNGESKRAKLDYDDHEDYSHNIEEAASNYNVESVISVTDTKTEDSCLSSSSRDDSTTTEGSNDDTTSSPSIESKETNDVEMVNKCGDCVSSS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03413 412 Pfam RhoGAP domain 125 259 IPR000198 GO:0007165
Vifa5g03413 412 ProSiteProfiles CRIB domain profile. 63 76 IPR000095 -
Vifa5g03413 412 CDD RhoGAP 125 275 - -
Vifa5g03413 412 MobiDBLite consensus disorder prediction 291 323 - -
Vifa5g03413 412 Gene3D Rho GTPase activation protein 95 292 IPR008936 -
Vifa5g03413 412 SUPERFAMILY GTPase activation domain, GAP 104 282 IPR008936 -
Vifa5g03413 412 MobiDBLite consensus disorder prediction 359 399 - -
Vifa5g03413 412 PANTHER MKIAA1688 PROTEIN 24 379 IPR044785 GO:0005096
Vifa5g03413 412 SMART PBD_5 63 97 IPR000095 -
Vifa5g03413 412 ProSiteProfiles Rho GTPase-activating proteins domain profile. 108 289 IPR000198 GO:0007165
Vifa5g03413 412 SMART RhoGAP_3 122 285 IPR000198 GO:0007165
Vifa5g03413 412 MobiDBLite consensus disorder prediction 1 26 - -
Vifa5g03413 412 MobiDBLite consensus disorder prediction 359 396 - -
Vifa5g03413 412 Pfam P21-Rho-binding domain 62 90 IPR000095 -
Vifa5g03413 412 CDD CRIB 61 91 - -
Vifa5g03413 412 Gene3D CRIB domain 58 94 IPR036936 -
Vifa5g03413 412 MobiDBLite consensus disorder prediction 305 323 - -
Vifa5g03413 412 FunFam Rho GTPase-activating protein 5 93 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03413 Vifa-Chr5 1121501765 1121503391 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03413 - K20642 gmx:100812700 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03413 5 1121501765 1121503391 Vifa5g03413 5 1121501765 1121503391 ECH