Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03410 ATGATGCTCCGAATTCGAAGCCGCGATGGCCTTGAACGAGTAAAACTCGAAAACCCAAACGCCACAAAAATCTCCGACCTCAAATCCATAATCGAGAAACAACTACGAATCCCCACTCACAACCAAACCCTCTCCACTAATCAAAACCTCTTACTCGCCAAATCTCGCGAAGATCTTCTCCGATTCACCGACATGTCAAACCCTAACACTCCTCTTACTGCCTTAAACCTTTCCCACGGCTCAATCGTGTTTTTAGCCTACGAAGGCGAACGTAGGGTTCAAGGTCCAGCTGCTTTCAGTCCCGCCGGTTCTTTCGGGAAGAAGATGACCATGGATGATCTCATCGCCAAACAGATGCGTGTTGGTAGGCAAGAGAATCCGCATTGTGAAATTGTTTCGTTTGATCGTGATTGCGCTAACGCGTTCCAGCACTATGTCAATGAGACGCTGGCTTTTGCTGTTAAGAGAGGTGGGTTTATGTATGGGACTGTTTCTGAGGAGGGGAAGGTTGAGGTCAATTTTATATATGAGCCGCCGCAGCAAGGGTTGGAGGAGAATCTTATGTTTTTTAGGGATTCCGAGGAGGAGAAATATGTGGAAGCTATTGCCGCGGGGTTGGGGATGAGGAGGGTTGGGTTTATTTTTACTCAGAGTGTGAGTCAGGCCAAGAAGGATTATACTTTGTCTTATCGGGAAGTCTTGCAGGCTGCTGAGTATCATGCTGAGAGTGGTTTGAAGGAGTGGGTTACTGCCGTCGTCAAGCTGGAGGTGAATGAGGAAGCGGGTGGTGCTGATGTGCATTTTGAGGCTTTTCAGATGAGTGATGTGTGTATTAGGTTGTTTAAGGAAGGTTGGTATGACACTGAGGTTAAGGAGGATCATGATCCTAAGTTGTCTGTCATGAAGAAGGATGTGGTTGTTGGGGTTAAGGATACTAAAGAGGTTGATAATGATTTCTTCTTGGTGGTTGTCAAAATTGCTGATCATCAGGGTCCTCTATCATCAACATTTCCCGTTGAGAACCGGAGTACTCAAGTGACTGCAAATGCGCTGAAGAATCATCTTGAACGGACTAAAAGTCTTCCATTTGTGAAGCGAATTTCAGATTTTCATCTTCTTCTCATACTATCAAGGGTTTTGGACGTGAATGCTGATGTTCCTGCATTGACAGAATGTGTACTGACTCAGAGTGCTGTACCAGAAGGTTACCAGATCCTTATTGAGTCCATGGCTAGTGCTGCTTAG 1245 0.4578 MMLRIRSRDGLERVKLENPNATKISDLKSIIEKQLRIPTHNQTLSTNQNLLLAKSREDLLRFTDMSNPNTPLTALNLSHGSIVFLAYEGERRVQGPAAFSPAGSFGKKMTMDDLIAKQMRVGRQENPHCEIVSFDRDCANAFQHYVNETLAFAVKRGGFMYGTVSEEGKVEVNFIYEPPQQGLEENLMFFRDSEEEKYVEAIAAGLGMRRVGFIFTQSVSQAKKDYTLSYREVLQAAEYHAESGLKEWVTAVVKLEVNEEAGGADVHFEAFQMSDVCIRLFKEGWYDTEVKEDHDPKLSVMKKDVVVGVKDTKEVDNDFFLVVVKIADHQGPLSSTFPVENRSTQVTANALKNHLERTKSLPFVKRISDFHLLLILSRVLDVNADVPALTECVLTQSAVPEGYQILIESMASAA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03410 414 Gene3D - 1 101 - -
Vifa5g03410 414 ProSiteProfiles MPN domain profile. 131 277 IPR037518 -
Vifa5g03410 414 Pfam Nuclear pore localisation protein NPL4 1 85 IPR024682 -
Vifa5g03410 414 CDD MPN_NPL4 120 376 IPR007717 -
Vifa5g03410 414 CDD Ubl_AtNPL4_like 1 85 - -
Vifa5g03410 414 FunFam NPL4-like protein 1 1 101 - -
Vifa5g03410 414 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
Vifa5g03410 414 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 1 92 IPR016563 GO:0006511
Vifa5g03410 414 Pfam NPL4 family 158 231 IPR007717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03410 Vifa-Chr5 1119831466 1119836827 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03410 K14015 - gmx:100811623 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03410 5 1119831466 1119836827 Vifa5g03410 5 1119831466 1119836827 ECH